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Sample GSM198722 Query DataSets for GSM198722
Status Public on Jun 09, 2008
Title SCC induced spontaneously in C3H/He mouse, 1 day after gamma irradiation at 50 Gy (g_scc7_50_1d_4)
Sample type RNA
 
Source name Murine tumor
Organism Mus musculus
Characteristics Squamous cell carcinoma developed spontaneously in C3H/He mouse etablished by Dr. L. Milas from the University of Texas, M. D. Anderson Cancer Center, Huston, USA
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol CodeLink Gene Expression System: Manual Labelled cRNA Target Preparation
 
Hybridization protocol CodeLink Gene Expression System: Single-Assay Bioarray Hybridization and Detection
Scan protocol Scanning CodeLink Bioarrays on Agilent G2565 microarray scanner
Description 1 day after gamma irradiation at 50 Gy
Data processing global median normalization
 
Submission date Jun 06, 2007
Last update date Jun 02, 2008
Contact name Kazunori Nojiri
Organization name National Institute of Radiological Sciences
Street address 4-9-1, Anagawa, Inage-ku
City Chiba
ZIP/Postal code 263-8555
Country Japan
 
Platform ID GPL2897
Series (2)
GSE5331 Radiation-induced genes expressed in two murine tumors.
GSE11629 Gene expression profiles of four murine tumors after carbon-ion (C-ion) or gamma irradiation.

Data table header descriptions
ID_REF
Array Logical array
Raw_intensity Raw signal intensity value
VALUE same as UNF_VALUE but with flagged values removed
Quality_flag CodeLink quality flag
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area
UNF_VALUE Median normalized signal intensity value

Data table
ID_REF Array Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area UNF_VALUE
1001 1 15418.5313 183.8538 G 129.1667 15515.5313 6197.0000 17261.1055 164 14.4503040313721 120.120208825232 98.9917 97.0000 15.4135 124 183.8538
1002 1 738.2907 8.8035 G 7.1494 834.2907 968.0000 340.5279 86 10.4641580581665 116.693516140685 97.2527 96.0000 13.7957 188 8.8035
1003 1 48.1449 0.5741 G 1.2434 142.1449 141.0000 24.3193 69 9.37302112579346 114.323639969312 95.6538 94.0000 13.5491 188 0.5741
1004 1 60.6944 0.7237 G 1.3668 157.6944 154.0000 29.3516 72 9.57461452484131 115.377199927119 96.5934 97.0000 12.2515 188 0.7237
1005 1 60.7969 0.7250 G 1.3331 154.7969 159.0000 22.0887 64 9.02703380584717 116.121521175206 95.0220 94.0000 14.7477 188 0.7250
1006 1 60.5000 0.7214 G 1.3455 159.5000 158.0000 27.1830 66 9.16699600219727 118.547452366886 99.3242 99.0000 13.0316 188 0.7214
1007 1 15418.8623 183.8577 G 128.9341 15517.8623 6167.0000 17556.9023 162 14.3619222640991 120.355035171155 100.0000 99.0000 14.2367 124 183.8577
1008 1 15521.0898 185.0767 G 131.9692 15619.0898 5321.0000 16738.9023 135 13.1105813980103 118.354033508947 98.2198 98.0000 13.5694 188 185.0767
1010 1 410.3415 4.8930 G 4.4006 505.3415 585.0000 187.5621 82 10.2179079055786 114.8354205434 94.4615 95.0000 13.2236 188 4.8930
1012 1 240.5946 2.8689 G 2.9894 334.5946 362.0000 110.1795 74 9.70668506622314 111.928468708928 93.4121 94.0000 11.9523 188 2.8689
1013 1 65.5672 0.7818 G 1.4170 159.5672 159.0000 26.8913 67 9.23618125915527 112.612814565645 94.3407 94.0000 12.4085 188 0.7818
1014 1 15679.8047 186.9693 G 133.4806 15777.8047 7129.0000 16812.8301 135 13.1105813980103 118.203001606236 97.8462 98.0000 13.4687 188 186.9693
1015 1 15529.1563 185.1729 G 135.6731 15625.1563 6093.0000 17370.7910 143 13.4934520721436 115.167684270951 97.6667 96.0000 12.7785 124 185.1729
1017 1 60.1385 0.7171 G 1.3455 154.1385 151.0000 21.4052 65 9.09728336334229 114.558904039681 94.3462 94.0000 13.7059 188 0.7171
1018 1 68.4167 0.8158 G 1.4222 165.4167 162.0000 27.0760 60 8.74038791656494 116.310222594607 95.0989 97.0000 12.8735 188 0.8158
1019 1 66.1186 0.7884 G 1.3544 162.1186 156.0000 30.4192 59 8.66724491119385 119.693588569403 96.9780 96.0000 15.7957 188 0.7884
1020 1 43.4688 0.5183 G 1.2360 138.4688 141.0000 19.1254 64 9.02703380584717 112.033012294734 95.0824 95.0000 11.3553 188 0.5183
1021 1 15189.7363 181.1256 G 130.6613 15285.7363 6370.0000 17221.6191 150 13.8197660446167 116.98749389526 97.8417 96.0000 13.9917 124 181.1256
1022 1 16817.1914 200.5317 G 140.2506 16917.1914 9437.0000 17555.8477 133 13.0131034851074 120.621186923256 99.7857 100.0000 13.7475 188 200.5317
1024 1 49.6667 0.5922 G 1.2728 143.6667 145.0000 24.1707 60 8.74038791656494 112.873991167426 95.4396 94.0000 12.5827 188 0.5922

Total number of rows: 36227

Table truncated, full table size 4686 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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