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Sample GSM198728 Query DataSets for GSM198728
Status Public on Jun 09, 2008
Title SCC induced spontaneously in C3H/He mouse, 6 hours after gamma irradiation at 30 Gy (g_nrs1_30_6h_2)
Sample type RNA
 
Source name Murine tumor
Organism Mus musculus
Characteristics Squamous cell carcinoma developed spontaneously in C3H/He mouse etablished by National Institute of Radiological Science, Chiba, Japan
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol CodeLink Gene Expression System: Manual Labelled cRNA Target Preparation
 
Hybridization protocol CodeLink Gene Expression System: Single-Assay Bioarray Hybridization and Detection
Scan protocol Scanning CodeLink Bioarrays on Agilent G2565 microarray scanner
Description 6 hours after gamma irradiation at 30 Gy
Data processing global median normalization
 
Submission date Jun 06, 2007
Last update date Jun 02, 2008
Contact name Kazunori Nojiri
Organization name National Institute of Radiological Sciences
Street address 4-9-1, Anagawa, Inage-ku
City Chiba
ZIP/Postal code 263-8555
Country Japan
 
Platform ID GPL2897
Series (1)
GSE11629 Gene expression profiles of four murine tumors after carbon-ion (C-ion) or gamma irradiation.

Data table header descriptions
ID_REF
Array Logical array
Raw_intensity Raw signal intensity value
VALUE same as UNF_VALUE but with flagged values removed
Quality_flag CodeLink quality flag
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area
UNF_VALUE Median normalized signal intensity value

Data table
ID_REF Array Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area UNF_VALUE
1001 1 7230.0864 53.1677 G 78.8413 7304.0864 4173.0000 7957.7222 118 12.2573356628418 92.6428509219953 74.9066 74.0000 12.4286 188 53.1677
1002 1 3090.6392 22.7275 G 35.1953 3164.6392 3610.0000 2352.3633 97 11.1132459640503 89.9165442891927 74.8736 74.0000 10.6110 188 22.7275
1003 1 38.9000 0.2861 G 1.2172 112.9000 112.0000 20.0512 50 7.97884559631348 92.7572842824314 75.5083 74.0000 12.5049 187 0.2861
1004 1 69.8806 0.5139 G 1.6114 144.8806 143.0000 34.0813 67 9.23618125915527 89.9098605507321 74.0220 75.0000 9.9399 188 0.5139
1005 1 777.2338 5.7155 G 9.2876 851.2338 1008.0000 498.5628 77 9.90148735046387 91.6530214128712 75.2637 74.0000 11.7687 188 5.7155
1006 1 21.6977 0.1596 G 1.0294 94.6977 95.0000 14.6724 43 7.3992772102356 91.9947011498792 74.7680 73.0000 12.6631 187 0.1596
1007 1 7487.9395 55.0639 G 81.5183 7562.9395 4983.0000 7825.3433 118 12.2573356628418 92.7759678802542 76.4972 75.0000 11.8506 187 55.0639
1008 1 7349.2954 54.0443 G 79.1211 7426.2954 3661.0000 7873.6851 117 12.2052869796753 93.8598045796339 77.0769 77.0000 11.2399 188 54.0443
1010 1 1135.7559 8.3520 G 13.4662 1209.7559 1544.0000 748.1246 86 10.4641580581665 89.8366607404487 74.1250 74.0000 10.5578 174 8.3520
1012 1 805.1411 5.9207 G 9.2913 882.1411 1077.0000 489.9451 78 9.96557521820068 94.9424131779987 76.9505 77.0000 11.9616 188 5.9207
1013 1 40.7936 0.3000 G 1.2589 116.7936 113.0000 19.1744 63 8.95623207092285 92.7731753466721 75.4615 76.0000 11.1821 188 0.3000
1014 1 7312.8989 53.7767 G 76.7754 7390.8989 4473.0000 7678.3511 111 11.8882122039795 96.2665293465176 78.3242 78.0000 12.1777 188 53.7767
1015 1 7387.0850 54.3222 G 79.1861 7464.0850 4568.0000 7964.2651 120 12.3607740402222 94.2599810561372 77.1955 77.0000 11.5067 185 54.3222
1017 1 50.3929 0.3706 G 1.3784 124.3929 123.0000 22.9687 56 8.444016456604 90.2476418472226 74.3956 74.0000 10.8318 188 0.3706
1018 1 71.2769 0.5241 G 1.5845 146.2769 151.0000 28.2334 65 9.09728336334229 92.3163236809414 74.9835 75.0000 11.5442 188 0.5241
1019 1 307.1892 2.2590 G 4.0776 382.1892 436.0000 160.2384 74 9.70668506622314 93.7292378569346 75.4286 75.0000 12.4862 188 2.2590
1020 1 27.1707 0.1998 G 1.1047 102.1707 100.0000 14.9175 41 7.22515201568604 92.4863138482324 75.4945 75.0000 11.6575 188 0.1998
1021 1 6884.6431 50.6274 G 76.4254 6959.6431 2981.0000 7897.6636 128 12.7661533355713 91.0645021434562 74.2363 75.0000 10.7097 188 50.6274
1022 1 7473.7944 54.9598 G 78.8310 7548.7944 4504.0000 7735.9858 109 11.7806243896484 95.7592659533274 74.6209 75.0000 13.8395 188 54.9598
1024 1 7.6064 0.0559 L 0.8820 81.6064 79.0000 16.3630 94 10.9400415420532 92.5281940312659 75.5801 74.0000 12.3521 187 0.0559

Total number of rows: 36227

Table truncated, full table size 4688 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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