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Sample GSM198729 Query DataSets for GSM198729
Status Public on Jun 09, 2008
Title SCC induced spontaneously in C3H/He mouse, 1 day after gamma irradiation at 30 Gy (g_nrs1_30_1d_3)
Sample type RNA
 
Source name Murine tumor
Organism Mus musculus
Characteristics Squamous cell carcinoma developed spontaneously in C3H/He mouse etablished by National Institute of Radiological Science, Chiba, Japan
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol CodeLink Gene Expression System: Manual Labelled cRNA Target Preparation
 
Hybridization protocol CodeLink Gene Expression System: Single-Assay Bioarray Hybridization and Detection
Scan protocol Scanning CodeLink Bioarrays on Agilent G2565 microarray scanner
Description 1 day after gamma irradiation at 30 Gy
Data processing global median normalization
 
Submission date Jun 06, 2007
Last update date Jun 02, 2008
Contact name Kazunori Nojiri
Organization name National Institute of Radiological Sciences
Street address 4-9-1, Anagawa, Inage-ku
City Chiba
ZIP/Postal code 263-8555
Country Japan
 
Platform ID GPL2897
Series (2)
GSE5331 Radiation-induced genes expressed in two murine tumors.
GSE11629 Gene expression profiles of four murine tumors after carbon-ion (C-ion) or gamma irradiation.

Data table header descriptions
ID_REF
Array Logical array
Raw_intensity Raw signal intensity value
VALUE same as UNF_VALUE but with flagged values removed
Quality_flag CodeLink quality flag
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area
UNF_VALUE Median normalized signal intensity value

Data table
ID_REF Array Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area UNF_VALUE
1001 1 7280.7026 49.7665 G 66.5716 7370.7026 3902.0000 7792.5635 113 11.9948348999023 110.718458983665 89.5934 90.0000 13.8123 188 49.7665
1002 1 3138.6111 C 28.3484 3231.6111 4224.0000 2092.1401 90 10.7047443389893 113.996219133108 92.3132 93.0000 13.9975 188 21.4536
1003 1 48.2076 C 1.2125 143.2076 143.0000 20.7531 53 8.21472454071045 118.108625225599 95.5275 95.0000 15.4058 188 0.3295
1004 1 101.8852 C 1.6878 198.8852 200.0000 44.9700 61 8.81292343139648 117.838914500921 97.2582 97.0000 13.8926 188 0.6964
1005 1 938.4730 C 8.5334 1037.4730 1315.0000 544.9389 74 9.70668506622314 121.57761344202 99.5617 99.0000 15.0517 168 6.4148
1006 1 40.1600 C 1.1549 135.1600 119.0000 65.2460 75 9.77204990386963 117.028813772231 97.2342 95.0000 14.6859 115 0.2745
1007 1 8770.6670 C 68.6438 8874.6670 6036.0000 8342.5527 99 11.2272310256958 129.285764443725 104.3242 104.0000 16.8572 188 59.9510
1008 1 7791.6992 C 61.8127 7893.6992 4956.0000 7883.5591 105 11.562445640564 127.703544564324 101.8187 102.0000 17.1357 188 53.2593
1010 1 1154.0723 C 9.9399 1258.0723 1439.0000 656.2202 83 10.2800235748291 126.567797420815 102.6868 104.0000 15.0452 188 7.8885
1012 1 1150.6875 C 10.3974 1247.6875 1501.0000 710.7800 80 10.0925302505493 119.99946874609 99.5824 97.0000 15.3330 188 7.8654
1013 1 62.1154 C 1.3016 163.1154 165.0000 21.8286 52 8.1368579864502 125.320652691583 101.4670 101.0000 16.2138 188 0.4246
1014 1 7483.4312 C 61.5347 7583.4312 4264.0000 7617.4868 111 11.8882122039795 123.238253998197 99.8791 100.0000 15.4922 188 51.1522
1015 1 7855.0088 C 65.3392 7954.0088 4887.0000 8309.4854 113 11.9948348999023 121.734081678478 99.4134 99.0000 15.1561 185 53.6921
1017 1 38.7885 C 1.1304 135.7885 137.0000 16.6483 52 8.1368579864502 120.12283810497 97.6747 97.0000 15.4152 172 0.2651
1018 1 83.5500 C 1.5230 182.5500 191.0000 34.6027 60 8.74038791656494 119.864883834792 99.4231 99.0000 13.9099 188 0.5711
1019 1 320.8533 C 3.5856 416.8533 483.0000 171.8150 75 9.77204990386963 116.259110371341 96.2637 96.0000 13.5061 188 2.1932
1020 1 26.6458 C 1.0466 121.6458 120.0000 21.6087 48 7.81764030456543 116.228839453413 96.4859 95.0000 14.1526 183 0.1821
1021 1 7227.0083 C 60.7441 7326.0083 4117.0000 7867.2485 122 12.4633550643921 120.604535795694 98.9655 99.0000 14.4030 180 49.3995
1022 1 7581.8999 C 64.8770 7675.8999 5128.0000 7644.0044 112 11.9416427612305 118.314685291659 95.9086 94.0000 16.2098 181 51.8253
1024 1 9.7356 CL 0.8977 103.7356 101.0000 18.0156 87 10.5248203277588 115.563364743939 94.8472 94.0000 14.3756 224 0.0665

Total number of rows: 36227

Table truncated, full table size 4690 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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