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Sample GSM20 Query DataSets for GSM20
Status Public on Jan 24, 2001
Title NHGRI_RMS-13
Sample type RNA
 
Channel 1
Source name rhabdomyosarcoma
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name NHGRI_Melanoma_Ref
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description See http://www.nhgri.nih.gov/DIR/Microarray/Nature_paper.pdf
and http://www.nhgri.nih.gov/DIR/Microarray/Melanoma_Supplement/index.html
 
Submission date Jan 08, 2001
Last update date May 27, 2005
Contact name Michael Bittner
E-mail(s) mbittner@nhgri.nih.gov
Phone 301-496-7980
Fax 301-402-3241
URL http://www.nhgri.nih.gov/Intramural_research/People/bittnerm.html
Organization name NHGRI, NIH
Department Cancer Genetics Branch
Street address
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
 
Platform ID GPL7
Series (1)
GSE1 NHGRI_Melanoma_class

Data table header descriptions
ID_REF
CH1_TARGET_TOP Sample 1 (Red Channel) target location in image - top
CH1_TARGET_LT Sample 1 (Red Channel) target location in image - left
CH1_TARGET_BOT Sample 1 (Red Channel) target location in image - bottom
CH1_TARGET_RT Sample 1 (Red Channel) target location in image - right
CH1_RAW Sample 1 (Red Channel) Total Intensity
CH1_MEAN Sample 1 (Red Channel) Mean Intensity
CH1_SD Sample 1 (Red Channel) Standard Deviation
CH1_AREA Sample 1 (Red Channel) Area
CH1_BKD_MEAN Sample 1 (Red Channel) Mean Background Level
CH1_BKD_SD Sample 1 (Red Channel) Background Standard Deviation
CH2_TARGET_TOP Sample 2 (Green Channel) target location in image - top
CH2_TARGET_LT Sample 2 Green Channel) target location in image - left
CH2_TARGET_BOT Sample 2 Green Channel) target location in image - bottom
CH2_TARGET_RT Sample 2 Green Channel) target location in image - right
CH2_RAW Sample 2 Green Channel) Total Intensity
CH1_MEAN Sample 1 (Red Channel) Mean Intensity
CH2_SD Sample 2 Green Channel) Standard Deviation
CH2_AREA Sample 2 Green Channel) Area
CH2_BKD_MEAN Sample 2 Green Channel) Mean Background Level
CH2_BKD_SD Sample 2 Green Channel) Background Standard Deviation
UNION_AREA Union Area
RATIO Raw Ratio
VALUE log ratio of PRE_VALUE
CONF_LEVEL Confidence Level - fixed at 99%
CONF_LOW Confidence Interval - Lower Bound - Raw Ratio
CONF_UP Confidence Interval - Upper Bound - Raw Ratio
NORM_FACTOR M-value
CV Coefficient of variance
PRE_VALUE Calibrated Ratio

Data table
ID_REF CH1_TARGET_TOP CH1_TARGET_LT CH1_TARGET_BOT CH1_TARGET_RT CH1_RAW CH1_MEAN CH1_SD CH1_AREA CH1_BKD_MEAN CH1_BKD_SD CH2_TARGET_TOP CH2_TARGET_LT CH2_TARGET_BOT CH2_TARGET_RT CH2_RAW CH1_MEAN CH2_SD CH2_AREA CH2_BKD_MEAN CH2_BKD_SD UNION_AREA RATIO VALUE CONF_LEVEL CONF_LOW CONF_UP NORM_FACTOR CV PRE_VALUE
1 57 130 75 148 5292634 42311.7 19766.4 132 370.8 161.2 57 130 75 148 5874469 43502.0 19821.6 125 3872.8 489.8 132 0.973 -0.0476923 99.000 0.422 2.793 1.086 0.221 0.896
2 673 134 691 152 16132 3585.4 624.3 12 447.6 192.6 673 134 691 152 22289 1794.6 451.8 0 3777.6 387.3 12 1.998 0.2648183 99.000 0.422 2.793 1.086 0.221 1.840
3 93 130 111 148 76107 3459.8 1728.1 28 345.5 160.0 93 130 111 148 116762 2250.6 1254.6 18 3587.5 405.1 28 1.537 0.1510633 99.000 0.422 2.793 1.086 0.221 1.416
4 709 134 727 152 42523 3447.1 1055.0 19 418.6 201.0 709 134 727 152 73140 3028.2 944.7 15 3620.9 397.1 19 1.138 0.0203613 99.000 0.422 2.793 1.086 0.221 1.048
5 130 130 148 148 264913 3463.0 2366.1 73 376.3 169.0 130 130 148 148 474038 3387.2 2344.4 64 3482.9 371.8 77 1.022 -0.0264103 99.000 0.422 2.793 1.086 0.221 0.941
6 745 135 763 153 1516281 27130.1 22381.6 63 438.7 195.6 745 135 763 153 1100535 16283.1 17198.6 43 3726.6 425.1 63 1.666 0.1858253 99.000 0.422 2.793 1.086 0.221 1.534
7 166 130 184 148 1188574 10590.2 6795.7 116 415.1 189.7 166 130 184 148 907411 4912.6 3830.7 74 3489.4 326.6 116 2.156 0.2977613 99.000 0.422 2.793 1.086 0.221 1.985
8 781 135 799 153 565977 17143.7 13200.0 39 543.0 253.0 781 135 799 153 891373 23956.8 17978.7 23 3898.6 494.1 40 0.716 -0.1811153 99.000 0.422 2.793 1.086 0.221 0.659
9 203 129 221 147 416427 5596.4 2886.6 74 438.8 190.5 203 129 221 147 500250 3630.2 2244.7 63 3619.8 392.1 77 1.542 0.1522883 99.000 0.422 2.793 1.086 0.221 1.420
10 817 135 835 153 103269 6378.6 4110.5 23 506.0 239.7 817 135 835 153 69496 808.1 650.2 0 3825.0 500.8 23 7.893 0.8614153 99.000 0.422 2.793 1.086 0.221 7.268
11 239 129 257 147 888385 8730.3 6523.5 105 428.3 172.3 239 129 257 147 1549878 12231.6 9983.9 76 3746.5 424.1 105 0.714 -0.1824353 99.000 0.422 2.793 1.086 0.221 0.657
12 854 136 872 154 1 1.0 0.0 0 449.5 190.8 854 136 872 154 1 1.0 0.0 0 3663.9 360.3 0 1.000 -0.0357403 99.000 0.422 2.793 1.086 0.221 0.921
13 64 748 82 766 1869482 16580.7 8143.3 118 414.6 161.2 64 748 82 766 1151130 7460.6 4004.1 96 3004.2 357.5 118 2.222 0.3111183 99.000 0.422 2.793 1.086 0.221 2.047
14 663 745 681 763 3728433 37842.6 19529.5 105 594.8 221.9 663 745 681 763 1853043 15631.0 8269.4 81 3472.5 401.2 105 2.421 0.3481103 99.000 0.422 2.793 1.086 0.221 2.229
15 100 748 118 766 1804670 16807.9 5790.5 112 544.7 220.8 100 748 118 766 2812655 23843.1 9223.2 108 3201.7 431.0 112 0.705 -0.1877553 99.000 0.422 2.793 1.086 0.221 0.649
16 699 745 717 763 377837 4902.0 2343.9 76 573.9 197.0 699 745 717 763 669816 6283.0 3225.3 74 3424.5 405.0 77 0.780 -0.1438763 99.000 0.422 2.793 1.086 0.221 0.718
17 137 748 155 766 3133531 28421.2 14984.1 116 592.9 244.7 137 748 155 766 1183373 7696.9 4322.7 98 3260.3 420.6 116 3.693 0.5314793 99.000 0.422 2.793 1.086 0.221 3.400
18 736 745 754 763 331318 3868.7 2140.7 74 548.9 198.3 736 745 754 763 813154 7443.0 3433.5 81 3399.1 405.4 83 0.520 -0.3196643 99.000 0.422 2.793 1.086 0.221 0.479
19 173 748 191 766 923565 8526.9 3417.0 108 617.3 244.1 173 748 191 766 1367994 10215.7 4357.8 105 3328.8 457.9 109 0.835 -0.1140743 99.000 0.422 2.793 1.086 0.221 0.769
20 772 745 790 763 784874 9991.1 5501.8 80 615.3 216.8 772 745 790 763 605894 4779.9 2998.4 78 3407.9 374.9 82 2.090 0.2844313 99.000 0.422 2.793 1.086 0.221 1.925

Total number of rows: 8192

Table truncated, full table size 1338 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
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