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Sample GSM200044 Query DataSets for GSM200044
Status Public on May 29, 2008
Title E14 cortex GFPlow Prominin+ cells, sample S2
Sample type RNA
 
Source name FACS-sorted cells from cortex of E14 embryos of hGFAP eGFP mice
Organism Mus musculus
Characteristics Selected by FACS for positive staining for prominin and GFP
Extracted molecule total RNA
Extraction protocol RNeasy Mini kit (Qiagen) with on column DNase treatment
Label Biotin
Label protocol MessageAmp II-Biotin Enhanced (Ambion, 1791)
 
Hybridization protocol Affymetrix Expression protocol
Scan protocol Affymetrix Expression protocol
Description Prospective isolation of radial glia subtypes – lineage and transcriptom analysis Luisa Pinto1, Michael Mader1, Martin Irmler2, Marco Gentilini3, Federico Santoni4, Vassiliki Nikoletopoulou5, Steven Pollard6, Alessandro Bulfone3, Yves Barde5, Johannes Beckers2, and Magdalena Götz1,7,8
Data processing Mas 5.0
 
Submission date Jun 11, 2007
Last update date Aug 28, 2018
Contact name Johannes Beckers
E-mail(s) beckers@helmholtz-muenchen.de
Organization name Helmholtz Zentrum Muenchen
Department Institute of Experimental Genetics
Street address Ingolstaedter Landstr. 1
City Neuherberg
ZIP/Postal code 85764
Country Germany
 
Platform ID GPL1261
Series (1)
GSE8034 Prospective isolation of functionally distinct radial glial subtypes - lineage and transcriptome analysis
Relations
Reanalyzed by GSE119085

Data table header descriptions
ID_REF
VALUE Mas 5.0
ABS_CALL
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 276.551 P 5.16732e-05
AFFX-BioB-M_at 400.766 P 4.42873e-05
AFFX-BioB-3_at 284.579 P 4.42873e-05
AFFX-BioC-5_at 707.939 P 5.16732e-05
AFFX-BioC-3_at 813.873 P 4.42873e-05
AFFX-BioDn-5_at 1358.03 P 4.42873e-05
AFFX-BioDn-3_at 2961.46 P 4.42873e-05
AFFX-CreX-5_at 9810.89 P 5.16732e-05
AFFX-CreX-3_at 11619.5 P 4.42873e-05
AFFX-DapX-5_at 12.2271 A 0.275146
AFFX-DapX-M_at 6.5981 A 0.440646
AFFX-DapX-3_at 1.3221 A 0.966323
AFFX-LysX-5_at 1.16849 A 0.749204
AFFX-LysX-M_at 8.95901 A 0.368438
AFFX-LysX-3_at 7.5741 A 0.712257
AFFX-PheX-5_at 2.30667 A 0.645547
AFFX-PheX-M_at 0.691579 A 0.971543
AFFX-PheX-3_at 22.2843 A 0.116092
AFFX-ThrX-5_at 12.7228 A 0.0676444
AFFX-ThrX-M_at 2.85466 A 0.631573

Total number of rows: 45101

Table truncated, full table size 1378 Kbytes.




Supplementary file Size Download File type/resource
GSM200044.CEL.gz 3.2 Mb (ftp)(http) CEL
GSM200044.CHP.gz 250.3 Kb (ftp)(http) CHP
Raw data provided as supplementary file
Processed data included within Sample table
Processed data provided as supplementary file

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