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Sample GSM200056 Query DataSets for GSM200056
Status Public on May 29, 2008
Title E14 cortex GFPhigh Prominin+ cells, sample S2
Sample type RNA
Source name FACS-sorted cells from cortex of E14 embryos of hGFAP eGFP mice
Organism Mus musculus
Characteristics Selected by FACS for positive staining for prominin and GFP
Extracted molecule total RNA
Extraction protocol RNeasy Mini kit (Qiagen) with on column DNase treatment
Label Biotin
Label protocol MessageAmp II-Biotin Enhanced (Ambion, 1791)
Hybridization protocol Affymetrix Expression protocol
Scan protocol Affymetrix Expression protocol
Description Prospective isolation of radial glia subtypes – lineage and transcriptom analysis Luisa Pinto1, Michael Mader1, Martin Irmler2, Marco Gentilini3, Federico Santoni4, Vassiliki Nikoletopoulou5, Steven Pollard6, Alessandro Bulfone3, Yves Barde5, Johannes Beckers2, and Magdalena Götz1,7,8
Data processing Mas 5.0
Submission date Jun 11, 2007
Last update date Aug 28, 2018
Contact name Johannes Beckers
Organization name Helmholtz Zentrum Muenchen
Department Institute of Experimental Genetics
Street address Ingolstaedter Landstr. 1
City Neuherberg
ZIP/Postal code 85764
Country Germany
Platform ID GPL1261
Series (1)
GSE8034 Prospective isolation of functionally distinct radial glial subtypes - lineage and transcriptome analysis
Reanalyzed by GSE119085

Data table header descriptions
VALUE Mas 5.0

Data table
AFFX-BioB-5_at 266.093 P 9.4506e-05
AFFX-BioB-M_at 377.744 P 4.42873e-05
AFFX-BioB-3_at 275.291 P 5.16732e-05
AFFX-BioC-5_at 643.255 P 4.42873e-05
AFFX-BioC-3_at 819.061 P 4.42873e-05
AFFX-BioDn-5_at 1332.31 P 4.42873e-05
AFFX-BioDn-3_at 2615.71 P 4.42873e-05
AFFX-CreX-5_at 8671.38 P 4.42873e-05
AFFX-CreX-3_at 10743.8 P 4.42873e-05
AFFX-DapX-5_at 4.19093 A 0.852061
AFFX-DapX-M_at 4.32242 A 0.794268
AFFX-DapX-3_at 21.6384 A 0.175328
AFFX-LysX-5_at 12.0485 A 0.455413
AFFX-LysX-M_at 5.3879 A 0.724854
AFFX-LysX-3_at 18.5905 A 0.382599
AFFX-PheX-5_at 20.737 A 0.0780018
AFFX-PheX-M_at 13.558 A 0.559354
AFFX-PheX-3_at 17.525 A 0.544587
AFFX-ThrX-5_at 13.3678 A 0.5
AFFX-ThrX-M_at 4.47565 A 0.904333

Total number of rows: 45101

Table truncated, full table size 1370 Kbytes.

Supplementary file Size Download File type/resource
GSM200056.CEL.gz 3.5 Mb (ftp)(http) CEL
GSM200056.CHP.gz 247.0 Kb (ftp)(http) CHP
Raw data provided as supplementary file
Processed data included within Sample table
Processed data provided as supplementary file

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