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Sample GSM200057 Query DataSets for GSM200057
Status Public on May 29, 2008
Title E14 cortex GFPhigh Prominin+ cells, sample S3
Sample type RNA
Source name FACS-sorted cells from cortex of E14 embryos of hGFAP eGFP mice
Organism Mus musculus
Characteristics Selected by FACS for positive staining for prominin and GFP
Extracted molecule total RNA
Extraction protocol RNeasy Mini kit (Qiagen) with on column DNase treatment
Label Biotin
Label protocol MessageAmp II-Biotin Enhanced (Ambion, 1791)
Hybridization protocol Affymetrix Expression protocol
Scan protocol Affymetrix Expression protocol
Description Prospective isolation of radial glia subtypes – lineage and transcriptom analysis Luisa Pinto1, Michael Mader1, Martin Irmler2, Marco Gentilini3, Federico Santoni4, Vassiliki Nikoletopoulou5, Steven Pollard6, Alessandro Bulfone3, Yves Barde5, Johannes Beckers2, and Magdalena Götz1,7,8
Data processing Mas 5.0
Submission date Jun 11, 2007
Last update date Aug 28, 2018
Contact name Johannes Beckers
Organization name Helmholtz Zentrum Muenchen
Department Institute of Experimental Genetics
Street address Ingolstaedter Landstr. 1
City Neuherberg
ZIP/Postal code 85764
Country Germany
Platform ID GPL1261
Series (1)
GSE8034 Prospective isolation of functionally distinct radial glial subtypes - lineage and transcriptome analysis
Reanalyzed by GSE119085

Data table header descriptions
VALUE Mas 5.0

Data table
AFFX-BioB-5_at 295.914 P 5.16732e-05
AFFX-BioB-M_at 445.355 P 4.42873e-05
AFFX-BioB-3_at 294.176 P 4.42873e-05
AFFX-BioC-5_at 694.807 P 5.16732e-05
AFFX-BioC-3_at 884.706 P 4.42873e-05
AFFX-BioDn-5_at 1438.85 P 4.42873e-05
AFFX-BioDn-3_at 2973.32 P 4.42873e-05
AFFX-CreX-5_at 10236.4 P 5.16732e-05
AFFX-CreX-3_at 11541 P 4.42873e-05
AFFX-DapX-5_at 8.34519 A 0.287743
AFFX-DapX-M_at 16.8946 A 0.287743
AFFX-DapX-3_at 0.771062 A 0.953575
AFFX-LysX-5_at 1.11431 A 0.876448
AFFX-LysX-M_at 1.28617 A 0.834139
AFFX-LysX-3_at 2.36794 A 0.883908
AFFX-PheX-5_at 2.11705 A 0.804754
AFFX-PheX-M_at 0.878992 A 0.897835
AFFX-PheX-3_at 5.42778 A 0.48511
AFFX-ThrX-5_at 18.6837 A 0.0956282
AFFX-ThrX-M_at 5.55892 A 0.5

Total number of rows: 45101

Table truncated, full table size 1382 Kbytes.

Supplementary file Size Download File type/resource
GSM200057.CEL.gz 3.3 Mb (ftp)(http) CEL
GSM200057.CHP.gz 249.3 Kb (ftp)(http) CHP
Raw data provided as supplementary file
Processed data included within Sample table
Processed data provided as supplementary file

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