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Sample GSM200060 Query DataSets for GSM200060
Status Public on May 29, 2008
Title E14 cortex GFPhigh cells sample 1
Sample type RNA
 
Source name FACS-sorted cells from cortex of E14 embryos of hGFAP eGFP mice
Organism Mus musculus
Characteristics Selected by FACS for positive staining for GFP
Extracted molecule total RNA
Extraction protocol RNeasy Mini kit (Qiagen) with on column DNase treatment
Label Biotin
Label protocol MessageAmp II-Biotin Enhanced (Ambion, 1791)
 
Hybridization protocol Affymetrix Expression protocol
Scan protocol Affymetrix Expression protocol
Description Prospective isolation of radial glia subtypes – lineage and transcriptom analysis Luisa Pinto1, Michael Mader1, Martin Irmler2, Marco Gentilini3, Federico Santoni4, Vassiliki Nikoletopoulou5, Steven Pollard6, Alessandro Bulfone3, Yves Barde5, Johannes Beckers2, and Magdalena Götz1,7,8
Data processing Mas 5.0
 
Submission date Jun 11, 2007
Last update date Aug 28, 2018
Contact name Johannes Beckers
E-mail(s) beckers@helmholtz-muenchen.de
Organization name Helmholtz Zentrum Muenchen
Department Institute of Experimental Genetics
Street address Ingolstaedter Landstr. 1
City Neuherberg
ZIP/Postal code 85764
Country Germany
 
Platform ID GPL1261
Series (1)
GSE8034 Prospective isolation of functionally distinct radial glial subtypes - lineage and transcriptome analysis
Relations
Reanalyzed by GSE119085

Data table header descriptions
ID_REF
VALUE Mas 5.0
ABS_CALL
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 972.848 P 6.02111e-05
AFFX-BioB-M_at 2081.25 P 4.42873e-05
AFFX-BioB-3_at 1389.91 P 4.42873e-05
AFFX-BioC-5_at 2457.48 P 4.42873e-05
AFFX-BioC-3_at 2519.03 P 5.16732e-05
AFFX-BioDn-5_at 3791.48 P 4.42873e-05
AFFX-BioDn-3_at 11576.6 P 4.42873e-05
AFFX-CreX-5_at 24379.1 P 4.42873e-05
AFFX-CreX-3_at 27244.2 P 4.42873e-05
AFFX-DapX-5_at 284.378 P 8.14279e-05
AFFX-DapX-M_at 591.747 P 0.000581214
AFFX-DapX-3_at 854.447 P 5.16732e-05
AFFX-LysX-5_at 56.3767 P 0.00179445
AFFX-LysX-M_at 101.305 P 0.00159257
AFFX-LysX-3_at 214.799 P 0.00012664
AFFX-PheX-5_at 83.3318 P 0.0012475
AFFX-PheX-M_at 91.019 P 0.000389797
AFFX-PheX-3_at 123.884 P 0.000146581
AFFX-ThrX-5_at 46.9583 P 0.036569
AFFX-ThrX-M_at 102.718 P 5.16732e-05

Total number of rows: 45101

Table truncated, full table size 1371 Kbytes.




Supplementary file Size Download File type/resource
GSM200060.CEL.gz 3.2 Mb (ftp)(http) CEL
GSM200060.CHP.gz 249.0 Kb (ftp)(http) CHP
Raw data provided as supplementary file
Processed data included within Sample table
Processed data provided as supplementary file

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