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Sample GSM201845 Query DataSets for GSM201845
Status Public on Jun 15, 2008
Title Granulosa cell tumor from Smad1/5/8 mutant mouse Sample 1
Sample type RNA
 
Source name granulosa cell tumor
Organism Mus musculus
Characteristics Granulosa cell tumor from Smad1/5 conditional knockout Smad1flox/floxSmad5floxfloxSmad8+/-Amhr2cre+. Background is C57BL/6J;129S5/SvEvBrd. 35 week-old female mouse
Treatment protocol No treatment
Growth protocol No growth protocol
Extracted molecule total RNA
Extraction protocol Tumor collected and stored in RNA later overnight at 4degrees, then frozen at -80. RNA from Qiagen Rneasy kit.
Label Affymetrix Standard
Label protocol Affymetrix Standard
 
Hybridization protocol Affymetrix Standard
Scan protocol Affymetrix
Description All labeling, hybridization, and scanning performed from standard Affymetrix protocols at the Baylor College of Medicine Microarray Facility
Data processing GCOS
 
Submission date Jun 16, 2007
Last update date Aug 28, 2018
Contact name Martin Matzuk
Organization name Baylor College of Medicine
Street address One Baylor Plaza
City Houston
State/province TX
ZIP/Postal code 77030
Country USA
 
Platform ID GPL1261
Series (1)
GSE8156 Smad1/5/8 mutant granulosa cell tumor gene expression
Relations
Reanalyzed by GSE119085

Data table header descriptions
ID_REF
VALUE Intensity value
ABS_CALL Present, Absent, Marginal
DETECTION P-VALUE Detection p-value

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 628.049 P 0.000389797
AFFX-BioB-M_at 1001.27 P 4.42873e-05
AFFX-BioB-3_at 647.461 P 4.42873e-05
AFFX-BioC-5_at 2167.53 P 5.16732e-05
AFFX-BioC-3_at 2585.56 P 4.42873e-05
AFFX-BioDn-5_at 4059.56 P 4.42873e-05
AFFX-BioDn-3_at 6633.01 P 4.42873e-05
AFFX-CreX-5_at 22084 P 5.16732e-05
AFFX-CreX-3_at 25809 P 4.42873e-05
AFFX-DapX-5_at 2.97834 A 0.897855
AFFX-DapX-M_at 26.2066 A 0.559359
AFFX-DapX-3_at 9.1974 A 0.712257
AFFX-LysX-5_at 4.0621 A 0.804734
AFFX-LysX-M_at 5.34916 A 0.824693
AFFX-LysX-3_at 20.7848 A 0.275146
AFFX-PheX-5_at 4.14105 A 0.904333
AFFX-PheX-M_at 3.89471 A 0.794268
AFFX-PheX-3_at 18.8554 A 0.368438
AFFX-ThrX-5_at 6.44827 A 0.904333
AFFX-ThrX-M_at 3.4068 A 0.932322

Total number of rows: 45101

Table truncated, full table size 1386 Kbytes.




Supplementary file Size Download File type/resource
GSM201845.CEL.gz 6.1 Mb (ftp)(http) CEL
GSM201845.CHP.gz 11.0 Mb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file
Raw data provided as supplementary file

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