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GEO accession:
Sample GSM201845
Query DataSets for GSM201845
Status
Public on Jun 15, 2008
Title
Granulosa cell tumor from Smad1/5/8 mutant mouse Sample 1
Sample type
RNA
Source name
granulosa cell tumor
Organism
Mus musculus
Characteristics
Granulosa cell tumor from Smad1/5 conditional knockout Smad1flox/floxSmad5floxfloxSmad8+/-Amhr2cre+. Background is C57BL/6J;129S5/SvEvBrd. 35 week-old female mouse
Treatment protocol
No treatment
Growth protocol
No growth protocol
Extracted molecule
total RNA
Extraction protocol
Tumor collected and stored in RNA later overnight at 4degrees, then frozen at -80. RNA from Qiagen Rneasy kit.
Label
Affymetrix Standard
Label protocol
Affymetrix Standard
Hybridization protocol
Affymetrix Standard
Scan protocol
Affymetrix
Description
All labeling, hybridization, and scanning performed from standard Affymetrix protocols at the Baylor College of Medicine Microarray Facility
Data processing
GCOS
Submission date
Jun 16, 2007
Last update date
Aug 28, 2018
Contact name
Martin Matzuk
Organization name
Baylor College of Medicine
Street address
One Baylor Plaza
City
Houston
State/province
TX
ZIP/Postal code
77030
Country
USA
Platform ID
GPL1261
Series (1)
GSE8156
Smad1/5/8 mutant granulosa cell tumor gene expression
Relations
Reanalyzed by
GSE119085
Data table header descriptions
ID_REF
VALUE
Intensity value
ABS_CALL
Present, Absent, Marginal
DETECTION P-VALUE
Detection p-value
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
AFFX-BioB-5_at
628.049
P
0.000389797
AFFX-BioB-M_at
1001.27
P
4.42873e-05
AFFX-BioB-3_at
647.461
P
4.42873e-05
AFFX-BioC-5_at
2167.53
P
5.16732e-05
AFFX-BioC-3_at
2585.56
P
4.42873e-05
AFFX-BioDn-5_at
4059.56
P
4.42873e-05
AFFX-BioDn-3_at
6633.01
P
4.42873e-05
AFFX-CreX-5_at
22084
P
5.16732e-05
AFFX-CreX-3_at
25809
P
4.42873e-05
AFFX-DapX-5_at
2.97834
A
0.897855
AFFX-DapX-M_at
26.2066
A
0.559359
AFFX-DapX-3_at
9.1974
A
0.712257
AFFX-LysX-5_at
4.0621
A
0.804734
AFFX-LysX-M_at
5.34916
A
0.824693
AFFX-LysX-3_at
20.7848
A
0.275146
AFFX-PheX-5_at
4.14105
A
0.904333
AFFX-PheX-M_at
3.89471
A
0.794268
AFFX-PheX-3_at
18.8554
A
0.368438
AFFX-ThrX-5_at
6.44827
A
0.904333
AFFX-ThrX-M_at
3.4068
A
0.932322
Total number of rows:
45101
Table truncated, full table size
1386 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM201845.CEL.gz
6.1 Mb
(ftp)
(http)
CEL
GSM201845.CHP.gz
11.0 Mb
(ftp)
(http)
CHP
Processed data included within Sample table
Processed data provided as supplementary file
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