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Sample GSM201846 Query DataSets for GSM201846
Status Public on Jun 15, 2008
Title Granulosa cell tumor from Smad1/5/8 mutant mouse Sample 2
Sample type RNA
 
Source name granulosa cell tumor
Organism Mus musculus
Characteristics Granulosa cell tumor isolated from a Smad1flox/flox;Smad5flox/flox;Smad8+/-;Amhr2cre/+ female mouse age 32 weeks. Background is C57BL/6J;129S5/SvEvBrd
Treatment protocol No treatment
Growth protocol No growth protocol
Extracted molecule total RNA
Extraction protocol Tumor collected and stored in RNA later overnight at 4 degrees, then frozen at -80. RNA from Qiagen Rneasy kit.
Label Affymetrix Standard
Label protocol Affymetrix Standard
 
Hybridization protocol Affymetrix Standard
Scan protocol Affymetrix
Description All labeling, hybridization, and scanning performed from standard Affymetrix protocols at the Baylor College of Medicine Microarray Facility
Data processing GCOS
 
Submission date Jun 16, 2007
Last update date Aug 28, 2018
Contact name Martin Matzuk
Organization name Baylor College of Medicine
Street address One Baylor Plaza
City Houston
State/province TX
ZIP/Postal code 77030
Country USA
 
Platform ID GPL1261
Series (1)
GSE8156 Smad1/5/8 mutant granulosa cell tumor gene expression
Relations
Reanalyzed by GSE119085

Data table header descriptions
ID_REF
VALUE Intensity value
ABS_CALL Absent, Present, Marginal
DETECTION P-VALUE P-value

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 1055.29 P 0.000581214
AFFX-BioB-M_at 1535.3 P 4.42873e-05
AFFX-BioB-3_at 938.487 P 4.42873e-05
AFFX-BioC-5_at 3370.09 P 5.16732e-05
AFFX-BioC-3_at 4075 P 4.42873e-05
AFFX-BioDn-5_at 6318.63 P 4.42873e-05
AFFX-BioDn-3_at 11098.8 P 4.42873e-05
AFFX-CreX-5_at 32179.7 P 5.16732e-05
AFFX-CreX-3_at 36422.8 P 4.42873e-05
AFFX-DapX-5_at 5.64298 A 0.52976
AFFX-DapX-M_at 39.6234 A 0.574038
AFFX-DapX-3_at 3.2392 A 0.996788
AFFX-LysX-5_at 7.02575 A 0.574038
AFFX-LysX-M_at 8.9907 A 0.712257
AFFX-LysX-3_at 41.7731 A 0.175328
AFFX-PheX-5_at 5.20419 A 0.834139
AFFX-PheX-M_at 1.97949 A 0.979987
AFFX-PheX-3_at 9.00646 A 0.672921
AFFX-ThrX-5_at 2.80116 A 0.921998
AFFX-ThrX-M_at 20.707 A 0.659339

Total number of rows: 45101

Table truncated, full table size 1380 Kbytes.




Supplementary file Size Download File type/resource
GSM201846.CEL.gz 6.1 Mb (ftp)(http) CEL
GSM201846.CHP.gz 10.9 Mb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file
Raw data provided as supplementary file

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