NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM201847 Query DataSets for GSM201847
Status Public on Jun 15, 2008
Title Granulosa cell tumor from Smad1/5/8 mutant mouse Sample 3
Sample type RNA
 
Source name granulosa cell tumor
Organism Mus musculus
Characteristics Granulosa cell tumor disssected from a Smad1flox/flox;Smad5flox/flox;Smad8-/-;Amhr2cre/+ female mouse age 32 weeks
Treatment protocol No treatment
Growth protocol No growth protocol
Extracted molecule total RNA
Extraction protocol Tumor collected and stored in RNA later overnight at 4 degrees, then frozen at -80. RNA from Qiagen Rneasy kit.
Label Affymetrix Standard
Label protocol Affymetrix Standard
 
Hybridization protocol Affymetrix Standard
Scan protocol Affymetrix
Description All labeling, hybridization, and scanning performed from standard Affymetrix protocols at the Baylor College of Medicine Microarray Facility
Data processing GCOS
 
Submission date Jun 16, 2007
Last update date Aug 28, 2018
Contact name Martin Matzuk
Organization name Baylor College of Medicine
Street address One Baylor Plaza
City Houston
State/province TX
ZIP/Postal code 77030
Country USA
 
Platform ID GPL1261
Series (1)
GSE8156 Smad1/5/8 mutant granulosa cell tumor gene expression
Relations
Reanalyzed by GSE119085

Data table header descriptions
ID_REF
VALUE Intensity Value
ABS_CALL Absent, Marginal, Present
DETECTION P-VALUE P-value

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 1230.75 P 8.14279e-05
AFFX-BioB-M_at 2055.21 P 4.42873e-05
AFFX-BioB-3_at 1187.22 P 4.42873e-05
AFFX-BioC-5_at 4064.4 P 5.16732e-05
AFFX-BioC-3_at 4874.68 P 4.42873e-05
AFFX-BioDn-5_at 7443.02 P 4.42873e-05
AFFX-BioDn-3_at 12851.9 P 4.42873e-05
AFFX-CreX-5_at 37407.2 P 5.16732e-05
AFFX-CreX-3_at 41979.6 P 4.42873e-05
AFFX-DapX-5_at 19.3274 A 0.41138
AFFX-DapX-M_at 1.94554 A 0.9273
AFFX-DapX-3_at 6.34118 A 0.941556
AFFX-LysX-5_at 9.30147 A 0.559354
AFFX-LysX-M_at 6.08792 A 0.876428
AFFX-LysX-3_at 53.7987 P 0.0365565
AFFX-PheX-5_at 4.59459 A 0.897835
AFFX-PheX-M_at 2.37769 A 0.984817
AFFX-PheX-3_at 8.30687 A 0.58862
AFFX-ThrX-5_at 8.01512 A 0.760956
AFFX-ThrX-M_at 14.8277 A 0.48511

Total number of rows: 45101

Table truncated, full table size 1382 Kbytes.




Supplementary file Size Download File type/resource
GSM201847.CEL.gz 5.9 Mb (ftp)(http) CEL
GSM201847.CHP.gz 10.8 Mb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file
Raw data provided as supplementary file

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap