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Sample GSM202338 Query DataSets for GSM202338
Status Public on Dec 31, 2009
Title Sustained L-type Calcium Channel Blockade Alters Gene Regulation in the Adult Mouse Ventricle- Vehicle 2
Sample type RNA
Source name heart, left ventricle, free wall, 24 hours vehicle (0.02% ascorbic acid) treatment
Organism Mus musculus
Characteristics Strain: ICR
Gender: Female
Age: 12-14 weeks
Tissue: Heart/ left ventricle free wall
Treatment: 24 hours vehicle (0.02% ascorbic acid)
Biomaterial provider Elizabeth Schroder
Treatment protocol Female ICR mice (12-14 weeks age) weighing between 25 and 30 grams were anesthetized with a ketamine/xylazine mixture ( i.p.) allowing the subcutaneous implantation of miniosmotic pumps (Alzet, model 2001). The pumps were filled with vehicle (0.02% ascorbic acid). After treatment animals were anesthetized and weighed. Hearts were excised, rinsed, blotted dry, weighed, and then frozen on dry ice and the stored at -80oC until studied. Animals were anesthetized and euthanized according to animal protocols approved by the University of Kentucky Institutional Animal Care and Use Committee. This investigation conforms with the Guide for the Care and Use of Laboratory Animals published by the US National Institutes of Health (NIH Publication NO. 85-23, revised 1996).
Extracted molecule total RNA
Extraction protocol Left ventricular free wall from female mice was rapidly excised and either snap frozen at -80oC or used immediately for RNA isolation. Total RNA was isolated using the RNAqueous -4PCR kit (Ambion) and quantitated spectrophotometrically at 260nm. Contaminating genomic DNA was eliminated by DNase treatment (Ambion). RNA quality was assessed using the Agilent 2100 Bioanalyzer.
Label biotin
Label protocol standard Affymetrix procedures
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures
Description vehicle treated heart tissue
Data processing GeneChip Operating Software
Submission date Jun 19, 2007
Last update date Aug 14, 2011
Contact name Elizabeth Anne Schroder
Phone 859-323-2918
Organization name University of Kentucky
Department Physiology
Lab Satin Lab
Street address 800 Rose Street, MS508
City Lexington
State/province KY
ZIP/Postal code 40536-0298
Country USA
Platform ID GPL1261
Series (1)
GSE8367 Sustained L-type Calcium Channel Blockade Alters Gene Regulation in the Adult Mouse Ventricle

Data table header descriptions
VALUE calculated Signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE 'detection p-value', p-value that indicates the significance level of the detection call

Data table
AFFX-BioB-5_at 609.827 P 0.000296708
AFFX-BioB-M_at 1004.64 P 4.42873e-05
AFFX-BioB-3_at 583.54 P 6.02111e-05
AFFX-BioC-5_at 1799.1 P 5.16732e-05
AFFX-BioC-3_at 1723.18 P 4.42873e-05
AFFX-BioDn-5_at 3326.6 P 4.42873e-05
AFFX-BioDn-3_at 8921.75 P 5.16732e-05
AFFX-CreX-5_at 22273.5 P 5.16732e-05
AFFX-CreX-3_at 24117.8 P 4.42873e-05
AFFX-DapX-5_at 3.04519 A 0.824714
AFFX-DapX-M_at 32.9179 A 0.48511
AFFX-DapX-3_at 3.97686 A 0.883887
AFFX-LysX-5_at 14.8603 A 0.603089
AFFX-LysX-M_at 27.2282 A 0.699394
AFFX-LysX-3_at 17.5155 A 0.195266
AFFX-PheX-5_at 3.97172 A 0.749204
AFFX-PheX-M_at 1.84186 A 0.993813
AFFX-PheX-3_at 50.0099 A 0.327079
AFFX-ThrX-5_at 10.282 A 0.699394
AFFX-ThrX-M_at 4.35949 A 0.814869

Total number of rows: 45101

Table truncated, full table size 1378 Kbytes.

Supplementary file Size Download File type/resource
GSM202338.CEL.gz 3.6 Mb (ftp)(http) CEL
GSM202338.CHP.gz 244.5 Kb (ftp)(http) CHP
Raw data included within Sample table
Processed data included within Sample table
Raw data provided as supplementary file
Processed data provided as supplementary file

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