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Sample GSM203987 Query DataSets for GSM203987
Status Public on Jun 25, 2007
Title TGFBd8_23
Sample type RNA
 
Source name MCF10A
Organism Homo sapiens
Characteristics MCF10A
Extracted molecule total RNA
Extraction protocol RNeasy for cultured cells.
Label biotin
Label protocol Standard Affymetrix High Throughput Array protocol.
 
Hybridization protocol Standard Affymetrix High Throughput Array protocol.
Scan protocol Standard Affymetrix High Throughput Array protocol.
Description TGFbeta added.
Data processing CEL files were processed in a single batch with RMA 2, as implemented in Bioconductor for R version 2.3.0, with default parameters.
 
Submission date Jun 22, 2007
Last update date Aug 14, 2011
Contact name Mary Helen Barcellos-Hoff
E-mail(s) mhbarcellos-hoff@lbl.gov
Phone 510.486.6371
Fax 510.486.5586
URL http://www.lbl.gov/lifesciences/labs/barcellos-hoff_lab.html
Organization name Lawrence Berkeley National Laboratory
Department Life Sciences Division
Lab Barcellos-Hoff
Street address 1 Cyclotron Rd MS977R225A
City Berkeley
State/province CA
ZIP/Postal code 94720
Country USA
 
Platform ID GPL3921
Series (1)
GSE8240 EMT initiation in MCF10A cells subjected to ionizing radiation and treatment with transforming growth factor beta-1.

Data table header descriptions
ID_REF
VALUE RMA 2 normalized signal

Data table
ID_REF VALUE
1007_s_at 9.84873504412317
1053_at 7.50746692107942
117_at 5.2906420976358
121_at 7.89168034451469
1255_g_at 4.59142409476341
1294_at 5.89955358749986
1316_at 5.19228722734459
1320_at 5.65683581910139
1405_i_at 4.58861765967261
1431_at 5.0482089894982
1438_at 5.50018645213181
1487_at 8.23735408339091
1494_f_at 5.85143880419079
1598_g_at 9.27487730032017
160020_at 7.24041717432445
1729_at 7.67314111748212
1773_at 6.87622157597773
177_at 5.79602616205467
179_at 8.28684022076358
1861_at 8.87709591011798

Total number of rows: 22277

Table truncated, full table size 605 Kbytes.




Supplementary file Size Download File type/resource
GSM203987.CEL.gz 2.6 Mb (ftp)(http) CEL
GSM203987.CHP.gz 120.6 Kb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

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