|
| Status |
Public on Jun 25, 2007 |
| Title |
sham_23 |
| Sample type |
RNA |
| |
|
| Source name |
MCF10A
|
| Organism |
Homo sapiens |
| Characteristics |
MCF10A
|
| Extracted molecule |
total RNA |
| Extraction protocol |
RNeasy for cultured cells.
|
| Label |
biotin
|
| Label protocol |
Standard Affymetrix High Throughput Array protocol.
|
| |
|
| Hybridization protocol |
Standard Affymetrix High Throughput Array protocol.
|
| Scan protocol |
Standard Affymetrix High Throughput Array protocol.
|
| Description |
Untreated cells.
|
| Data processing |
CEL files were processed in a single batch with RMA 2, as implemented in Bioconductor for R version 2.3.0, with default parameters.
|
| |
|
| Submission date |
Jun 22, 2007 |
| Last update date |
Aug 14, 2011 |
| Contact name |
Mary Helen Barcellos-Hoff |
| E-mail(s) |
mhbarcellos-hoff@lbl.gov
|
| Phone |
510.486.6371
|
| Fax |
510.486.5586
|
| URL |
http://www.lbl.gov/lifesciences/labs/barcellos-hoff_lab.html
|
| Organization name |
Lawrence Berkeley National Laboratory
|
| Department |
Life Sciences Division
|
| Lab |
Barcellos-Hoff
|
| Street address |
1 Cyclotron Rd MS977R225A
|
| City |
Berkeley |
| State/province |
CA |
| ZIP/Postal code |
94720 |
| Country |
USA |
| |
|
| Platform ID |
GPL3921 |
| Series (1) |
| GSE8240 |
EMT initiation in MCF10A cells subjected to ionizing radiation and treatment with transforming growth factor beta-1. |
|
