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Sample GSM204001 Query DataSets for GSM204001
Status Public on May 19, 2008
Title Control-1
Sample type RNA
 
Source name Control-1
Organism Rattus norvegicus
Characteristics Sprague Dawley rats, 225-350 g, liver at 3 weeks of diet infusuion
Biomaterial provider ACNC
Treatment protocol Rats were fed either 5% Corn oil diet or 70% corn oil diet for 3 weeks via total enteral nutrition
Extracted molecule total RNA
Extraction protocol Total RNA was extracted using TRI reagent. RNA was cleaned using Qiagen RNeasy mini columns
Label biotin
Label protocol Standard Affymetrix protocol
 
Hybridization protocol Standard Affymetrix protocol
Scan protocol Standard Affymetrix protocol
Description Control-1, 5% Corn Oil
Data processing MAS 5.0 normalization
 
Submission date Jun 22, 2007
Last update date Aug 14, 2011
Contact name Kartik Shankar
E-mail(s) shankarkartik@uams.edu
Phone 501 364 2847
Fax 501 364 3161
Organization name University of Arkansas for Medical Sciences/Arkansas Childrens Nutrition Center
Department Pharmacology and Toxicology
Street address 1120 Marshall Street, Slot 512-20B
City Little rock
State/province AR
ZIP/Postal code 72202
Country USA
 
Platform ID GPL85
Series (1)
GSE8253 Non-alcoholic Steatohepatitis following feeding of high polyunsaturated fat diets

Data table header descriptions
ID_REF
VALUE Intensity
ABS_CALL absent or present
DETECTION P-VALUE p value

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-MurIL2_at 2.00007 A 0.937071
AFFX-MurIL10_at 3.65701 A 0.58862
AFFX-MurIL4_at 0.664735 A 0.990663
AFFX-MurFAS_at 9.83532 A 0.544587
AFFX-BioB-5_at 24.8088 A 0.205732
AFFX-BioB-M_at 98.9751 P 0.000169227
AFFX-BioB-3_at 50.0479 P 0.00227496
AFFX-BioC-5_at 245.535 P 8.14279e-05
AFFX-BioC-3_at 223.313 P 4.42873e-05
AFFX-BioDn-5_at 390.489 P 0.000662269
AFFX-BioDn-3_at 1020.22 P 0.000126798
AFFX-CreX-5_at 2807.78 P 4.42873e-05
AFFX-CreX-3_at 3378.05 P 4.42873e-05
AFFX-BioB-5_st 12.7595 A 0.41138
AFFX-BioB-M_st 5.48865 A 0.712257
AFFX-BioB-3_st 4.03305 A 0.834139
AFFX-BioC-5_st 5.39509 A 0.876428
AFFX-BioC-3_st 0.979287 A 0.957038
AFFX-BioDn-5_st 30.6508 A 0.185131
AFFX-BioDn-3_st 6.22239 A 0.340661

Total number of rows: 8799

Table truncated, full table size 283 Kbytes.




Supplementary file Size Download File type/resource
GSM204001.CEL.gz 1.9 Mb (ftp)(http) CEL
GSM204001.CHP.gz 2.6 Mb (ftp)(http) CHP
GSM204001.EXP.gz 483 b (ftp)(http) EXP
Processed data included within Sample table
Raw data provided as supplementary file
Processed data provided as supplementary file

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