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Sample GSM204003 Query DataSets for GSM204003
Status Public on May 19, 2008
Title Control-3
Sample type RNA
 
Source name Control-3
Organism Rattus norvegicus
Characteristics Rat ID 421, Sprague Dawley, 225-350 g, Liver
Biomaterial provider ACNC
Treatment protocol Rats were fed either 5% Corn oil diet or 70% corn oil diet for 3 weeks via total enteral nutrition
Extracted molecule total RNA
Extraction protocol Total RNA was extracted using TRI reagent. RNA was cleaned using Qiagen RNeasy mini columns
Label biotin
Label protocol Standard Affymetrix protocol
 
Hybridization protocol Standard Affymetrix protocol
Scan protocol Standard Affymetrix protocol
Description Control-1, 5% Corn Oil
Data processing MAS 5.0 normalization
 
Submission date Jun 22, 2007
Last update date Aug 14, 2011
Contact name Kartik Shankar
E-mail(s) shankarkartik@uams.edu
Phone 501 364 2847
Fax 501 364 3161
Organization name University of Arkansas for Medical Sciences/Arkansas Childrens Nutrition Center
Department Pharmacology and Toxicology
Street address 1120 Marshall Street, Slot 512-20B
City Little rock
State/province AR
ZIP/Postal code 72202
Country USA
 
Platform ID GPL85
Series (1)
GSE8253 Non-alcoholic Steatohepatitis following feeding of high polyunsaturated fat diets

Data table header descriptions
ID_REF
VALUE Intensity
ABS_CALL absent or present
DETECTION P-VALUE p value

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-MurIL2_at 1.36038 A 0.960339
AFFX-MurIL10_at 2.81108 A 0.686277
AFFX-MurIL4_at 0.859321 A 0.99859
AFFX-MurFAS_at 7.12052 A 0.440646
AFFX-BioB-5_at 49.9773 P 0.036569
AFFX-BioB-M_at 96.8929 P 4.42873e-05
AFFX-BioB-3_at 43.6261 P 0.000753643
AFFX-BioC-5_at 239.288 P 6.02111e-05
AFFX-BioC-3_at 160.525 P 4.42873e-05
AFFX-BioDn-5_at 399.154 P 0.000389797
AFFX-BioDn-3_at 933.049 P 9.4506e-05
AFFX-CreX-5_at 2609.23 P 4.42873e-05
AFFX-CreX-3_at 3369.78 P 4.42873e-05
AFFX-BioB-5_st 3.80005 A 0.52976
AFFX-BioB-M_st 10.2622 A 0.617401
AFFX-BioB-3_st 1.89377 A 0.876428
AFFX-BioC-5_st 2.56525 A 0.910522
AFFX-BioC-3_st 0.594402 A 0.969024
AFFX-BioDn-5_st 20.5848 A 0.195266
AFFX-BioDn-3_st 15.1741 A 0.239063

Total number of rows: 8799

Table truncated, full table size 283 Kbytes.




Supplementary file Size Download File type/resource
GSM204003.CEL.gz 1.8 Mb (ftp)(http) CEL
GSM204003.CHP.gz 2.6 Mb (ftp)(http) CHP
GSM204003.EXP.gz 485 b (ftp)(http) EXP
Processed data included within Sample table
Raw data provided as supplementary file
Processed data provided as supplementary file

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