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Sample GSM204004 Query DataSets for GSM204004
Status Public on May 19, 2008
Title NASH-1
Sample type RNA
 
Source name NASH-1
Organism Rattus norvegicus
Characteristics Rat ID 534, Sprague dawley, male, 225-350 g, liver
Biomaterial provider ACNC
Treatment protocol Rats were fed either 5% Corn oil diet or 70% corn oil diet for 3 weeks via total enteral nutrition
Extracted molecule total RNA
Extraction protocol Total RNA was extracted using TRI reagent. RNA was cleaned using Qiagen RNeasy mini columns
Label biotin
Label protocol Standard Affymetrix protocol
 
Hybridization protocol Standard Affymetrix protocol
Scan protocol Standard Affymetrix protocol
Description Control-1, 5% Corn Oil
Data processing MAS 5.0 normalization
 
Submission date Jun 22, 2007
Last update date Aug 14, 2011
Contact name Kartik Shankar
E-mail(s) shankarkartik@uams.edu
Phone 501 364 2847
Fax 501 364 3161
Organization name University of Arkansas for Medical Sciences/Arkansas Childrens Nutrition Center
Department Pharmacology and Toxicology
Street address 1120 Marshall Street, Slot 512-20B
City Little rock
State/province AR
ZIP/Postal code 72202
Country USA
 
Platform ID GPL85
Series (1)
GSE8253 Non-alcoholic Steatohepatitis following feeding of high polyunsaturated fat diets

Data table header descriptions
ID_REF
VALUE Intensity
ABS_CALL absent or present
DETECTION P-VALUE p value

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-MurIL2_at 3.35692 A 0.921998
AFFX-MurIL10_at 2.63506 A 0.672921
AFFX-MurIL4_at 1.13155 A 0.978098
AFFX-MurFAS_at 5.75372 A 0.60308
AFFX-BioB-5_at 44.4639 A 0.156732
AFFX-BioB-M_at 68.7354 P 0.000753643
AFFX-BioB-3_at 37.1935 P 0.036569
AFFX-BioC-5_at 171.986 P 0.000146581
AFFX-BioC-3_at 169.139 P 4.42873e-05
AFFX-BioDn-5_at 316.197 P 0.000972149
AFFX-BioDn-3_at 810.683 P 0.000169227
AFFX-CreX-5_at 2072.66 P 4.42873e-05
AFFX-CreX-3_at 2747.96 P 4.42873e-05
AFFX-BioB-5_st 5.40342 A 0.544587
AFFX-BioB-M_st 13.648 A 0.574038
AFFX-BioB-3_st 2.80362 A 0.9273
AFFX-BioC-5_st 3.45996 A 0.883887
AFFX-BioC-3_st 0.681267 A 0.98333
AFFX-BioDn-5_st 8.34339 A 0.287743
AFFX-BioDn-3_st 16.0145 A 0.327079

Total number of rows: 8799

Table truncated, full table size 283 Kbytes.




Supplementary file Size Download File type/resource
GSM204004.CEL.gz 1.9 Mb (ftp)(http) CEL
GSM204004.CHP.gz 2.6 Mb (ftp)(http) CHP
GSM204004.EXP.gz 486 b (ftp)(http) EXP
Processed data included within Sample table
Raw data provided as supplementary file
Processed data provided as supplementary file

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