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Sample GSM204017 Query DataSets for GSM204017
Status Public on May 19, 2008
Title NASH-3
Sample type RNA
 
Source name NASH-3
Organism Rattus norvegicus
Characteristics Rat ID 604, Sprague Dawley, male, 225-350 g, Liver
Biomaterial provider ACNC
Treatment protocol Rats were fed either 5% Corn oil diet or 70% corn oil diet for 3 weeks via total enteral nutrition
Extracted molecule total RNA
Extraction protocol Total RNA was extracted using TRI reagent. RNA was cleaned using Qiagen RNeasy mini columns
Label biotin
Label protocol Standard Affymetrix protocol
 
Hybridization protocol Standard Affymetrix protocol
Scan protocol Standard Affymetrix protocol
Description Control-1, 5% Corn Oil
Data processing MAS 5.0 normalization
 
Submission date Jun 22, 2007
Last update date Aug 14, 2011
Contact name Kartik Shankar
E-mail(s) shankarkartik@uams.edu
Phone 501 364 2847
Fax 501 364 3161
Organization name University of Arkansas for Medical Sciences/Arkansas Childrens Nutrition Center
Department Pharmacology and Toxicology
Street address 1120 Marshall Street, Slot 512-20B
City Little rock
State/province AR
ZIP/Postal code 72202
Country USA
 
Platform ID GPL85
Series (1)
GSE8253 Non-alcoholic Steatohepatitis following feeding of high polyunsaturated fat diets

Data table header descriptions
ID_REF
VALUE Intensity
ABS_CALL absent or present
DETECTION P-VALUE p value

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-MurIL2_at 2.94782 A 0.891021
AFFX-MurIL10_at 2.44366 A 0.686277
AFFX-MurIL4_at 4.41579 A 0.843268
AFFX-MurFAS_at 1.82559 A 0.794268
AFFX-BioB-5_at 7.34823 A 0.783476
AFFX-BioB-M_at 62.5733 P 0.00556451
AFFX-BioB-3_at 44.6179 P 0.00227496
AFFX-BioC-5_at 158.888 P 9.4506e-05
AFFX-BioC-3_at 174.876 P 5.16732e-05
AFFX-BioDn-5_at 292.299 P 0.000581214
AFFX-BioDn-3_at 706.013 P 0.000195116
AFFX-CreX-5_at 1939.28 P 4.42873e-05
AFFX-CreX-3_at 2389.79 P 4.42873e-05
AFFX-BioB-5_st 7.12838 A 0.52976
AFFX-BioB-M_st 4.18804 A 0.772364
AFFX-BioB-3_st 2.61884 A 0.937071
AFFX-BioC-5_st 2.50373 A 0.953518
AFFX-BioC-3_st 0.899549 A 0.979978
AFFX-BioDn-5_st 25.0494 A 0.165861
AFFX-BioDn-3_st 6.243 A 0.354453

Total number of rows: 8799

Table truncated, full table size 283 Kbytes.




Supplementary file Size Download File type/resource
GSM204017.CEL.gz 1.8 Mb (ftp)(http) CEL
GSM204017.CHP.gz 2.6 Mb (ftp)(http) CHP
GSM204017.EXP.gz 314 b (ftp)(http) EXP
Processed data included within Sample table
Raw data provided as supplementary file
Processed data provided as supplementary file

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