NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM209897 Query DataSets for GSM209897
Status Public on Mar 01, 2008
Title expression profile of human Schwann cells cultured from a CMT1A (PMP22 duplication) patient plantar nerve
Sample type SAGE
Anchor NlaIII
Tag Count 59934
Tag Length 10
 
Source name in vitro cultured Schwann cells
Organism Homo sapiens
Characteristics Schwann cells cultured in vitro, from plantar nerve, from 52 year old male CMT1A patient with duplication of PMP22
Extracted molecule total RNA
Extraction protocol Trizol extracted RNA from cultured cells
 
Description this sample has also been profiled using Agilent microarrays
 
Submission date Jul 12, 2007
Last update date Nov 19, 2008
Contact name Anneloor L.M.A. ten Asbroek
E-mail(s) a.l.tenasbroek@amc.uva.nl
Phone +31 20 566 3746
Organization name Academic Medical Center
Lab Neurogenetics Laboratory
Street address Meibergdreef 9
City Amsterdam
ZIP/Postal code 1105 AZ
Country Netherlands
 
Platform ID GPL4
Series (1)
GSE2529 human peripheral nervous system SAGE

Data table header descriptions
TAG tag sequence
COUNT
TPM tags per million

Data table
TAG COUNT TPM
AAAAAAAAAA 31 517.24
AAAAAAAAAC 1 16.69
AAAAAAAAAG 4 66.74
AAAAAAAAAT 1 16.69
AAAAAAAAGA 3 50.06
AAAAAAAGAG 1 16.69
AAAAAAAGCA 1 16.69
AAAAAAAGCC 1 16.69
AAAAAACAGG 1 16.69
AAAAAACATT 1 16.69
AAAAAACCCA 7 116.80
AAAAAACCCC 1 16.69
AAAAAACCCG 1 16.69
AAAAAACTCC 2 33.37
AAAAAACTGA 1 16.69
AAAAAAGAAA 1 16.69
AAAAAAGTCT 1 16.69
AAAAAATGGT 1 16.69
AAAAAATTTG 1 16.69
AAAAACACCC 1 16.69

Total number of rows: 16714

Table truncated, full table size 312 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap