|
Status |
Public on Dec 26, 2007 |
Title |
tumor tissue 6 weeks post virus injection mouse4 |
Sample type |
RNA |
|
|
Source name |
human breast cancer implant in nude mice
|
Organism |
Mus musculus |
Characteristics |
tumor implant 6 weeks post virus injection
|
Treatment protocol |
On day 30 after cell implantation, a single dose of virus (5 × 106 pfu of GLV-1h68 in 100 ml of PBS) was delivered via the femoral vein. Four mice per group were killed 3 and 6 weeks following GLV-1h68 injection. An identical number of control mice treated with PBS alone were killed in parallel.
|
Growth protocol |
To evaluate the involvement of host mechanisms in the eradication of transplanted xenografts, we implanted human GI-101A cells (5 × 106 in 100 ml of PBS) s.c. on the right hind leg of 6-8-week-old female nude mice.
|
Extracted molecule |
total RNA |
Extraction protocol |
Total RNA was extracted from excised tumors using a QIAGEN RNeasy Protect Mini Kit
|
Label |
biotin
|
Label protocol |
GeneChip® One-Cycle Target Labeling and Control Reagents (Affymetrix) according to manufacturer instructions
|
|
|
Hybridization protocol |
Hybridization as specified by Affymetrix using the DMSO protocol
|
Scan protocol |
Fluidics station 450 used to stain and wash arrays. Chips were scan using GCOS 1.4
|
Description |
tumor tissue 6 weeks post virus injection
|
Data processing |
Array data analysis utilized the BRB array tool (http://linus.nci.nih.gov/BRB-ArrayTools.html) developed by Dr. Richard Simon and Amy Peng Lam at NIH. Data were filtered at intensity >10, excluding absent calls and normalized via median centering. Probes with missing value or notations with absent calls in >50% of the entire experiments were also excluded.
|
|
|
Submission date |
Jul 18, 2007 |
Last update date |
Aug 28, 2018 |
Contact name |
Francesco Maria Marincola |
E-mail(s) |
fmarincola@sidra.org
|
Phone |
301-793-8210
|
Organization name |
Sidra Medical and Research Center
|
Street address |
Al Nasr Tower, AL Corniche Street, PO Box 26999
|
City |
Doha |
ZIP/Postal code |
PO Box 26999 |
Country |
Qatar |
|
|
Platform ID |
GPL1261 |
Series (1) |
GSE8513 |
Eradication of Solid Human Tumors in Nude Mice with an Intravenously Injected Light-Emitting Oncolytic Vaccinia Virus |
|
Relations |
Reanalyzed by |
GSE119085 |