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Sample GSM211452 Query DataSets for GSM211452
Status Public on Jul 18, 2007
Title Aldosterone-producing adenoma (APA11)
Sample type RNA
 
Source name Aldosterone-producing adenoma
Organism Homo sapiens
Characteristics Genotype: Homo sapiens
Extracted molecule total RNA
Extraction protocol The tissue was pulverized in liquid nitrogen to a powder. Total RNA was extracted using TRIzol Reagent (Invitrogen, Carlsbad, CA). The purity and integrity of the RNA were assessed by the Agilent 2100 Bioanalyzer (Agilent Technologies, Palo Alto, CA) and its quantity was determined by NanoDrop spectrophotometer (NanoDrop Technologies, Wilmington, DE).
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001,
 
Hybridization protocol Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Affymetrix Human Genome U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics
Scan protocol GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
Description Gene expression data from aldosterone-producing adenoma
Data processing The data were analyzed with GeneSpring 7.3 using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 1.
 
Submission date Jul 18, 2007
Last update date Aug 28, 2018
Contact name Ping Ye
E-mail(s) pye@mcg.edu
Phone 706 721 8779
Fax 706 721 8360
Organization name Medical College of Georgia
Department Physiology
Lab CA 3093
Street address 1120 15th Street
City Augusta
State/province GA
ZIP/Postal code 30912
Country USA
 
Platform ID GPL570
Series (1)
GSE8514 Expression data from normal adrenal gland and aldosterone-producing adenoma
Relations
Reanalyzed by GSE64985
Reanalyzed by GSE119087

Data table header descriptions
ID_REF
VALUE Signal
ABS_CALL indicating whether the transcript was present (P), absent (A), or marginal (M)
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 1201.95 P 0.000340305
AFFX-BioB-M_at 1796.87 P 4.42873e-05
AFFX-BioB-3_at 1090.06 P 4.42873e-05
AFFX-BioC-5_at 2701.68 P 5.16732e-05
AFFX-BioC-3_at 3334.35 P 4.42873e-05
AFFX-BioDn-5_at 6122.23 P 4.42873e-05
AFFX-BioDn-3_at 13052 P 6.02111e-05
AFFX-CreX-5_at 28596.2 P 5.16732e-05
AFFX-CreX-3_at 29545 P 4.42873e-05
AFFX-DapX-5_at 26.9066 A 0.16584
AFFX-DapX-M_at 14.0625 A 0.41138
AFFX-DapX-3_at 3.35466 A 0.963431
AFFX-LysX-5_at 14.5719 A 0.239063
AFFX-LysX-M_at 28.8331 A 0.41138
AFFX-LysX-3_at 12.5262 A 0.116113
AFFX-PheX-5_at 3.09062 A 0.897835
AFFX-PheX-M_at 17.3396 A 0.327079
AFFX-PheX-3_at 12.2361 A 0.699394
AFFX-ThrX-5_at 2.7491 A 0.897835
AFFX-ThrX-M_at 2.24777 A 0.783476

Total number of rows: 54675

Table truncated, full table size 1621 Kbytes.




Supplementary file Size Download File type/resource
GSM211452.CEL.gz 5.0 Mb (ftp)(http) CEL
GSM211452.CHP.gz 295.8 Kb (ftp)(http) CHP
Raw data provided as supplementary file
Processed data included within Sample table
Processed data provided as supplementary file

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