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Sample GSM211454 Query DataSets for GSM211454
Status Public on Jul 18, 2007
Title Aldosterone-producing adenoma (APA13)
Sample type RNA
Source name Aldosterone-producing adenoma
Organism Homo sapiens
Characteristics Genotype: Homo sapiens
Extracted molecule total RNA
Extraction protocol The tissue was pulverized in liquid nitrogen to a powder. Total RNA was extracted using TRIzol Reagent (Invitrogen, Carlsbad, CA). The purity and integrity of the RNA were assessed by the Agilent 2100 Bioanalyzer (Agilent Technologies, Palo Alto, CA) and its quantity was determined by NanoDrop spectrophotometer (NanoDrop Technologies, Wilmington, DE).
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001,
Hybridization protocol Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Affymetrix Human Genome U133 Plus 2.0. GeneChips were washed and stained in the Affymetrix Fluidics
Scan protocol GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
Description Gene expression data from aldosterone-producing adenoma
Data processing The data were analyzed with GeneSpring 7.3 using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 1.
Submission date Jul 18, 2007
Last update date Aug 28, 2018
Contact name Ping Ye
Phone 706 721 8779
Fax 706 721 8360
Organization name Medical College of Georgia
Department Physiology
Lab CA 3093
Street address 1120 15th Street
City Augusta
State/province GA
ZIP/Postal code 30912
Country USA
Platform ID GPL570
Series (1)
GSE8514 Expression data from normal adrenal gland and aldosterone-producing adenoma
Reanalyzed by GSE64985
Reanalyzed by GSE119087

Data table header descriptions
VALUE Signal
ABS_CALL indicating whether the transcript was present (P), absent (A), or marginal (M)

Data table
AFFX-BioB-5_at 532.414 P 0.000753643
AFFX-BioB-M_at 755.129 P 5.16732e-05
AFFX-BioB-3_at 472.624 P 6.02111e-05
AFFX-BioC-5_at 1189.4 P 5.16732e-05
AFFX-BioC-3_at 1650.56 P 4.42873e-05
AFFX-BioDn-5_at 2466.07 P 4.42873e-05
AFFX-BioDn-3_at 7695.3 P 7.00668e-05
AFFX-CreX-5_at 15648.4 P 5.16732e-05
AFFX-CreX-3_at 16770.9 P 4.42873e-05
AFFX-DapX-5_at 17.5205 A 0.382599
AFFX-DapX-M_at 8.8514 A 0.794268
AFFX-DapX-3_at 4.09407 A 0.993813
AFFX-LysX-5_at 17.018 A 0.60308
AFFX-LysX-M_at 18.9096 A 0.686277
AFFX-LysX-3_at 12.3918 A 0.52976
AFFX-PheX-5_at 4.66371 A 0.672921
AFFX-PheX-M_at 4.55923 A 0.843268
AFFX-PheX-3_at 14.1555 A 0.470241
AFFX-ThrX-5_at 2.81843 A 0.969024
AFFX-ThrX-M_at 6.25283 A 0.804734

Total number of rows: 54675

Table truncated, full table size 1616 Kbytes.

Supplementary file Size Download File type/resource
GSM211454.CEL.gz 4.9 Mb (ftp)(http) CEL
GSM211454.CHP.gz 295.6 Kb (ftp)(http) CHP
Raw data provided as supplementary file
Processed data included within Sample table
Processed data provided as supplementary file

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