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Sample GSM212640 Query DataSets for GSM212640
Status Public on Jul 22, 2008
Title classIIhiMECs NODaireKO rep1
Sample type RNA
 
Source name MHC class II high thymic medullary epithelial cells, NODaireKO
Organism Mus musculus
Characteristics Gender: male Age: 3-4.5 weeks Isolation: FACS of CD45-G8.8+Ly51intclassIIhi TECs Strain: NOD
Extracted molecule total RNA
Extraction protocol RNA isolated with Trizol reagent and amplified twice with the MessageAmp aRNA Kit (Ambion)
Label Biotin
Label protocol BioArray High Yield RNA Transcript Labeling T7 Kit (Enzo Life Sciences)
 
Hybridization protocol standard Affymetrix protocol
Scan protocol standard Affymetrix protocol
Description MHC class II high thymic medullary epithelial cells, NODaireKO jos3385
Data processing RMA
 
Submission date Jul 23, 2007
Last update date Aug 28, 2018
Contact name CBDM Lab
E-mail(s) cbdm@hms.harvard.edu
Phone 617-432-7747
Organization name Harvard Medical School
Department Microbiology and Immunobiology
Lab CBDM
Street address 77 Avenue Louis Pasteur
City Boston
State/province MA
ZIP/Postal code 02215
Country USA
 
Platform ID GPL1261
Series (1)
GSE8564 Analysis of Aire effects on individual mice of different genetic backgrounds
Relations
Reanalyzed by GSE119085

Data table header descriptions
ID_REF
VALUE RMA signal

Data table
ID_REF VALUE
1415670_at 318.611977020448
1415671_at 777.071136814336
1415672_at 2085.90972166559
1415673_at 312.45640442608
1415674_a_at 669.542098876005
1415675_at 361.852086526411
1415676_a_at 2468.37501636676
1415677_at 306.053021392791
1415678_at 1083.1473766245
1415679_at 3561.07456416491
1415680_at 252.915030526011
1415681_at 234.240192341456
1415682_at 238.291752387531
1415683_at 3307.46272921517
1415684_at 257.694775049413
1415685_at 151.477778829351
1415686_at 1909.74186449017
1415687_a_at 4130.89802195387
1415688_at 1427.49064448386
1415689_s_at 565.98900096139

Total number of rows: 45101

Table truncated, full table size 1245 Kbytes.




Supplementary file Size Download File type/resource
GSM212640.CEL.gz 3.5 Mb (ftp)(http) CEL
Processed data included within Sample table

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