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Sample GSM212642 Query DataSets for GSM212642
Status Public on Jul 22, 2008
Title classIIhiMECs NODaireKO rep3
Sample type RNA
 
Source name MHC class II high thymic medullary epithelial cells, NODaireKO
Organism Mus musculus
Characteristics Gender: male Age: 3-4.5 weeks Isolation: FACS of CD45-G8.8+Ly51intclassIIhi TECs Strain: NOD
Extracted molecule total RNA
Extraction protocol RNA isolated with Trizol reagent and amplified twice with the MessageAmp aRNA Kit (Ambion)
Label Biotin
Label protocol BioArray High Yield RNA Transcript Labeling T7 Kit (Enzo Life Sciences)
 
Hybridization protocol standard Affymetrix protocol
Scan protocol standard Affymetrix protocol
Description MHC class II high thymic medullary epithelial cells, NODaireKO jos3789
Data processing RMA
 
Submission date Jul 23, 2007
Last update date Aug 28, 2018
Contact name CBDM Lab
E-mail(s) cbdm@hms.harvard.edu
Phone 617-432-7747
Organization name Harvard Medical School
Department Microbiology and Immunobiology
Lab CBDM
Street address 77 Avenue Louis Pasteur
City Boston
State/province MA
ZIP/Postal code 02215
Country USA
 
Platform ID GPL1261
Series (1)
GSE8564 Analysis of Aire effects on individual mice of different genetic backgrounds
Relations
Reanalyzed by GSE119085

Data table header descriptions
ID_REF
VALUE RMA signal

Data table
ID_REF VALUE
1415670_at 243.724033545303
1415671_at 1039.16852961446
1415672_at 2260.97002412477
1415673_at 276.20721600372
1415674_a_at 706.522289956341
1415675_at 499.908750481052
1415676_a_at 1888.63853379175
1415677_at 453.038196120557
1415678_at 831.030944319942
1415679_at 3973.14720887696
1415680_at 281.5877454651
1415681_at 317.666427752839
1415682_at 176.74537013558
1415683_at 2784.09409449365
1415684_at 182.231623740059
1415685_at 107.997729293748
1415686_at 1452.45524102471
1415687_a_at 3745.20686081604
1415688_at 1210.05945538994
1415689_s_at 536.742861172638

Total number of rows: 45101

Table truncated, full table size 1245 Kbytes.




Supplementary file Size Download File type/resource
GSM212642.CEL.gz 3.9 Mb (ftp)(http) CEL
Processed data included within Sample table

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