NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM213761 Query DataSets for GSM213761
Status Public on Mar 14, 2008
Title Human IgG IP
Sample type RNA
 
Source name Human M17 Neuroblastoma Cells
Organism Homo sapiens
Characteristics Immunoprecipitated RNA comparison
Growth protocol Cultured in DMEM with 10% FBS
Extracted molecule total RNA
Extraction protocol TRIZOL
Label cy3
Label protocol Illumina Whole Genome Gene Expression Rev. D
 
Hybridization protocol Illumina Whole Genome Gene Expression Rev. D
Scan protocol BeadStation
Description RNA immunoprecipitated with a nonspecific IgG control antibody
Data processing Illumina BeadStudio Intensity value output unnormalized and background subtracted. Where the value is the is the average signal of four Human IgG IP replicates.
 
Submission date Jul 30, 2007
Last update date Aug 14, 2011
Contact name J Raphael Gibbs
E-mail(s) gibbsr@mail.nih.gov
Organization name National Institutue on Aging, NIH
Department Computational Biology Core
Lab Laboratory of Neurogenetics
Street address 35 Convent Drive, Bldg 35/1A1015, MSC3707
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
 
Platform ID GPL2507
Series (1)
GSE8632 RNA binding activity of the recessive parkinsonism protein DJ-1

Data table header descriptions
ID_REF
VALUE Signal
Detection_Score Illumina Detection Score

Data table
ID_REF VALUE Detection_Score
GI_10047089-S 82.1 0.265
GI_10047091-S 644.7 1
GI_10047093-S 577.1 1
GI_10047099-S 192.4 1
GI_10047103-S 324.1 1
GI_10047105-S 90.3 0.7251
GI_10047121-S 86.4 0.4812
GI_10047123-S 146.6 1
GI_10047133-A 80.4 0.2202
GI_10047133-I 96.1 0.9084
GI_10092578-S 86.5 0.5129
GI_10092585-S 115.9 0.9974
GI_10092596-S 335.4 1
GI_10092600-S 1084.6 1
GI_10092602-S 85.6 0.4819
GI_10092603-S 84.5 0.4443
GI_10092611-A 152.2 1
GI_10092616-S 536.7 1
GI_10092618-S 482.9 1
GI_10092638-S 95.3 0.8813

Total number of rows: 47293

Table truncated, full table size 1102 Kbytes.




Supplementary file Size Download File type/resource
GSM213761.txt.gz 592.9 Kb (ftp)(http) TXT
GSM213761_1.txt.gz 589.3 Kb (ftp)(http) TXT
GSM213761_2.txt.gz 587.8 Kb (ftp)(http) TXT
GSM213761_3.txt.gz 582.8 Kb (ftp)(http) TXT
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap