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Sample GSM2138753 Query DataSets for GSM2138753
Status Public on May 26, 2016
Title WGBS from skeletal muscle myoblast (ENCLB988SSO)
Sample type SRA
 
Source name Homo sapiens skeletal muscle myoblast primary cell
Organism Homo sapiens
Characteristics cell_type: skeletal muscle myoblast
biomaterial_type: primary cell
description: skeletal muscle myoblasts
biosample encode accession: ENCBS328AAA (SAMN04284352)
age: unknown
donor_id: ENCDO094AAA
dev stage: unknown
Sex: not collected
lab: John Stamatoyannopoulos, UW
link: ENCBS328AAA at ENCODE; https://www.encodeproject.org/ENCBS328AAA/
link: Derived from ENCODE donor ENCDO094AAA; https://www.encodeproject.org/ENCDO094AAA/
link: growth protocol; https://www.encodeproject.org/documents/076b9a67-5536-42f7-86fe-d21abb71b642/@@download/attachment/HSMM_Stam_protocol.pdf
link: ENCODE dbxrefs HSMM; http://genome.cse.ucsc.edu/cgi-bin/hgEncodeVocab?ra=encode/cv.ra&term=HSMM
link: Lonza sample source; http://www.lonza.com/
Extracted molecule genomic DNA
Extraction protocol growth protocol: https://www.encodeproject.org/documents/6e461240-5af7-462c-843f-3dae804f957a/@@download/attachment/HAIB_Myers_WGBSprotocol_2014-10-30.pdf
 
Library strategy Bisulfite-Seq
Library source genomic
Library selection RANDOM
Instrument model HiSeq X Ten
 
Description https://www.encodeproject.org/experiments/ENCSR328TBS/
***************
biological replicate number: 1
technical replicate number: 1
description: HAIB Whole Genome Bisulfite Sequencing HSMM
experiment encode accession: ENCSR328TBS
assay title: WGBS
assembly: GRCh38
encode release date: 2016-03-22
lab: Richard Myers, HAIB
library encode accession: ENCLB988SSO
Data processing See GSM*_README.txt supplementary file linked below
 
Submission date Apr 29, 2016
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL20795
Series (1)
GSE80877 WGBS from skeletal muscle myoblast (ENCSR328TBS)
Relations
BioSample SAMN04284352
SRA SRX1737933
Named Annotation GSM2138753_ENCFF087KYO_signal_GRCh38.bigWig
Named Annotation GSM2138753_ENCFF837SXM_methylation_state_at_CpG_GRCh38.bed.gz
Named Annotation GSM2138753_ENCFF374WYM_methylation_state_at_CHG_GRCh38.bed.gz
Named Annotation GSM2138753_ENCFF877NAH_methylation_state_at_CHH_GRCh38.bed.gz

Supplementary file Size Download File type/resource
GSM2138753_ENCFF087KYO_signal_GRCh38.bigWig 8.1 Gb (ftp)(http) BIGWIG
GSM2138753_ENCFF194AHI_methylation_state_at_CHG_GRCh38.bigBed 4.4 Gb (ftp)(http) BIGBED
GSM2138753_ENCFF374WYM_methylation_state_at_CHG_GRCh38.bed.gz 2.6 Gb (ftp)(http) BED
GSM2138753_ENCFF506MPF_methylation_state_at_CpG_GRCh38.bigBed 1.2 Gb (ftp)(http) BIGBED
GSM2138753_ENCFF837SXM_methylation_state_at_CpG_GRCh38.bed.gz 664.1 Mb (ftp)(http) BED
GSM2138753_ENCFF877NAH_methylation_state_at_CHH_GRCh38.bed.gz 8.1 Gb (ftp)(http) BED
GSM2138753_ENCFF910KAN_methylation_state_at_CHH_GRCh38.bigBed 11.0 Gb (ftp)(http) BIGBED
GSM2138753_ENCLB988SSO_README.txt.gz 779 b (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
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