GEO Publications
Handout
NAR 2024 (latest)
NAR 2002 (original)
All publications
FAQ
MIAME
Email GEO
NCBI
>
GEO
>
Accession Display
Not logged in |
Login
GEO help:
Mouse over screen elements for information.
Scope:
Self
Platform
Samples
Series
Family
Format:
HTML
SOFT
MINiML
Amount:
Brief
Quick
GEO accession:
Sample GSM214094
Query DataSets for GSM214094
Status
Public on Jul 31, 2008
Title
ART5
Sample type
RNA
Source name
Mouse spleen at 4 month
Organism
Mus musculus
Characteristics
Male DBA-1/BALB/c-Il1rn -/- F2 art5
Extracted molecule
total RNA
Extraction protocol
Trizol
Label
Biotin
Label protocol
Standard Affymetrix protocol
Hybridization protocol
Standard Affymetrix protocol with Fluidics Station 450
Scan protocol
Standard Affymetrix protocol with GeneChip Scanner 3000
Description
Gene expression data
Data processing
The data were analyzed with Expressiojn Console 1.1 using default MAS5 method. The target intensity was 500.
Submission date
Jul 31, 2007
Last update date
Aug 28, 2018
Contact name
Jian Yan
E-mail(s)
jyan1@utmem.edu
Phone
901-448-7830
Organization name
University of Tennessee Health Science Center
Department
Orthopedics Surgery
Lab
Weikuan Gu
Street address
956 Court Ave
City
Memphis
State/province
TN
ZIP/Postal code
38163
Country
USA
Platform ID
GPL1261
Series (1)
GSE8690
Microarray analysis identifies distinct subpopulations of arthritic mice deficient for interleukin 1 receptor antagonist
Relations
Reanalyzed by
GSE119085
Data table header descriptions
ID_REF
VALUE
MAS5-calculated signal intensity
ABS_CALL
the call in an absolute analysis that indicates if the transcript was present (P) , absent (A) , or marginal (M)
DETECTION P-VALUE
P value that indicates the significance levell of the detection call
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
AFFX-BioB-5_at
193.8187
P
0.001795911
AFFX-BioB-M_at
246.2097
P
8.14E-05
AFFX-BioB-3_at
294.4087
P
0.000753643
AFFX-BioC-5_at
680.6124
P
7.01E-05
AFFX-BioC-3_at
875.7493
P
0.000389797
AFFX-BioDn-5_at
1256.495
P
7.01E-05
AFFX-BioDn-3_at
3168.668
P
0.000146581
AFFX-CreX-5_at
8217.938
P
5.17E-05
AFFX-CreX-3_at
11664.17
P
5.17E-05
AFFX-DapX-5_at
44.44358
A
0.07269989
AFFX-DapX-M_at
22.36276
A
0.4702405
AFFX-DapX-3_at
35.91526
A
0.5445875
AFFX-LysX-5_at
7.207426
A
0.6593388
AFFX-LysX-M_at
7.390544
A
0.7492043
AFFX-LysX-3_at
50.65955
P
0.04296193
AFFX-PheX-5_at
21.83336
A
0.5740377
AFFX-PheX-M_at
1.945178
A
0.9944355
AFFX-PheX-3_at
62.16668
A
0.2628266
AFFX-ThrX-5_at
31.8382
A
0.5297595
AFFX-ThrX-M_at
5.022606
A
0.8246717
Total number of rows:
45101
Table truncated, full table size
1427 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM214094.CEL.gz
3.8 Mb
(ftp)
(http)
CEL
Processed data included within Sample table
|
NLM
|
NIH
|
GEO Help
|
Disclaimer
|
Accessibility
|
