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Sample GSM214716 Query DataSets for GSM214716
Status Public on Oct 19, 2007
Title N2 replicate 1
Sample type RNA
 
Source name Whole C.elegans, larva 4 stage
Organism Caenorhabditis elegans
Characteristics N2 strain. Whole C.elegans, larva 4 stage
Treatment protocol No treatment
Growth protocol fed with OP50 E.coli
Extracted molecule total RNA
Extraction protocol Ribopure Total RNA isolation kit
Label biotin
Label protocol According to Affymetrix protocol
 
Hybridization protocol According to Affymetrix protocol
Scan protocol According to Affymetrix protocol
Description N2 replicate 1. Asikainen et al. (2007): Whole genome microarray analysis of rrf-3 and eri-1 mutant C.elegans.
Data processing Robust Multichip Average (RMA) -algorithm was used for normalization and statistical processing (Bolstad et al.).
 
Submission date Aug 02, 2007
Last update date Aug 14, 2011
Contact name Suvi Tuulia Asikainen
E-mail(s) suvi.asikainen@helsinki.fi
Phone +358503311688
Organization name Karolinska Institutet
Department CLINTEC
Lab Outi Hovatta's lab
Street address Karolinska University Hospital
City Stockholm
State/province Huddinge
ZIP/Postal code 14186
Country Sweden
 
Platform ID GPL200
Series (1)
GSE8659 Whole genome microarray analysis of C. elegans rrf-3 and eri-1 mutants

Data table header descriptions
ID_REF
VALUE expression intensity
ABS_CALL a = absent, m = marginal, p =present
DETECTION P-VALUE detection p-value

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 61.035 P 0.00499819
AFFX-BioB-M_at 86.5127 P 0.0012475
AFFX-BioB-3_at 41.7643 P 0.000389797
AFFX-BioC-5_at 82.1263 P 0.00110197
AFFX-BioC-3_at 39.9368 P 0.000224668
AFFX-BioDn-5_at 281.865 P 4.42873e-05
AFFX-BioDn-3_at 881.858 P 5.16732e-05
AFFX-CreX-5_at 1973.68 P 4.42873e-05
AFFX-CreX-3_at 2641.95 P 4.42873e-05
AFFX-DapX-5_at 24.4884 P 0.000509415
AFFX-DapX-M_at 75.0479 P 0.00499819
AFFX-DapX-3_at 123.056 P 0.000146581
AFFX-LysX-5_at 0.892629 A 0.574038
AFFX-LysX-M_at 4.87185 A 0.60308
AFFX-LysX-3_at 16.4586 P 0.000340305
AFFX-PheX-5_at 12.8997 M 0.050229
AFFX-PheX-M_at 8.31491 A 0.440646
AFFX-PheX-3_at 24.806 A 0.139482
AFFX-ThrX-5_at 7.03414 A 0.41138
AFFX-ThrX-M_at 12.9257 A 0.0894781

Total number of rows: 22625

Table truncated, full table size 678 Kbytes.




Supplementary file Size Download File type/resource
GSM214716.CEL.gz 2.1 Mb (ftp)(http) CEL
GSM214716.CHP.gz 123.2 Kb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

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