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GEO accession:
Sample GSM214816
Query DataSets for GSM214816
Status
Public on Jul 31, 2008
Title
NON1
Sample type
RNA
Source name
Mouse spleen at 4 month
Organism
Mus musculus
Characteristics
Male DBA-1/BALB/c-Il1rn -/- F2 a=Non1
Extracted molecule
total RNA
Extraction protocol
Trizol
Label
Biotin
Label protocol
Standard Affymetrix protocol
Hybridization protocol
Standard Affymetrix protocol with Fluidics Station 450
Scan protocol
Standard Affymetrix protocol with GeneChip Scanner 3000
Description
Gene expression data
Data processing
The data were analyzed with Expressiojn Console 1.1 using default MAS5 method. The target intensity was 500.
Submission date
Aug 02, 2007
Last update date
Aug 28, 2018
Contact name
Jian Yan
E-mail(s)
jyan1@utmem.edu
Phone
901-448-7830
Organization name
University of Tennessee Health Science Center
Department
Orthopedics Surgery
Lab
Weikuan Gu
Street address
956 Court Ave
City
Memphis
State/province
TN
ZIP/Postal code
38163
Country
USA
Platform ID
GPL1261
Series (1)
GSE8690
Microarray analysis identifies distinct subpopulations of arthritic mice deficient for interleukin 1 receptor antagonist
Relations
Reanalyzed by
GSE119085
Data table header descriptions
ID_REF
VALUE
MAS5-calculated signal intensity
ABS_CALL
the call in an absolute analysis that indicates if the transcript was present (P) , absent (A) , or marginal (M)
DETECTION P-VALUE
P value that indicates the significance levell of the detection call
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
AFFX-BioB-5_at
495.7227
P
0.000753643
AFFX-BioB-M_at
708.4873
P
4.43E-05
AFFX-BioB-3_at
391.3511
P
0.000296708
AFFX-BioC-5_at
1244.434
P
6.02E-05
AFFX-BioC-3_at
1681.212
P
4.43E-05
AFFX-BioDn-5_at
2852.306
P
4.43E-05
AFFX-BioDn-3_at
5067.835
P
6.02E-05
AFFX-CreX-5_at
15246.82
P
5.17E-05
AFFX-CreX-3_at
20102.3
P
4.43E-05
AFFX-DapX-5_at
39.61484
A
0.7122569
AFFX-DapX-M_at
64.9026
A
0.1567315
AFFX-DapX-3_at
3.559788
A
0.9535185
AFFX-LysX-5_at
4.55371
A
0.8978349
AFFX-LysX-M_at
3.617825
A
0.9663227
AFFX-LysX-3_at
22.25608
A
0.6174008
AFFX-PheX-5_at
19.4195
A
0.6593388
AFFX-PheX-M_at
4.57318
A
0.949771
AFFX-PheX-3_at
40.3779
A
0.4702405
AFFX-ThrX-5_at
11.78885
A
0.9273001
AFFX-ThrX-M_at
7.876935
A
0.8520612
Total number of rows:
45101
Table truncated, full table size
1425 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM214816.CEL.gz
3.7 Mb
(ftp)
(http)
CEL
Processed data included within Sample table
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