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GEO accession:
Sample GSM214823
Query DataSets for GSM214823
Status
Public on Jul 31, 2008
Title
NON5
Sample type
RNA
Source name
Mouse spleen at 4 month
Organism
Mus musculus
Characteristics
Male DBA-1/BALB/c-Il1rn -/- F2 a=Non5
Extracted molecule
total RNA
Extraction protocol
Trizol
Label
Biotin
Label protocol
Standard Affymetrix protocol
Hybridization protocol
Standard Affymetrix protocol with Fluidics Station 450
Scan protocol
Standard Affymetrix protocol with GeneChip Scanner 3000
Description
Gene expression data
Data processing
The data were analyzed with Expressiojn Console 1.1 using default MAS5 method. The target intensity was 500.
Submission date
Aug 02, 2007
Last update date
Aug 28, 2018
Contact name
Jian Yan
E-mail(s)
jyan1@utmem.edu
Phone
901-448-7830
Organization name
University of Tennessee Health Science Center
Department
Orthopedics Surgery
Lab
Weikuan Gu
Street address
956 Court Ave
City
Memphis
State/province
TN
ZIP/Postal code
38163
Country
USA
Platform ID
GPL1261
Series (1)
GSE8690
Microarray analysis identifies distinct subpopulations of arthritic mice deficient for interleukin 1 receptor antagonist
Relations
Reanalyzed by
GSE119085
Data table header descriptions
ID_REF
VALUE
MAS5-calculated signal intensity
ABS_CALL
the call in an absolute analysis that indicates if the transcript was present (P) , absent (A) , or marginal (M)
DETECTION P-VALUE
P value that indicates the significance levell of the detection call
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
AFFX-BioB-5_at
206.8094
P
0.001795911
AFFX-BioB-M_at
344.2076
P
7.01E-05
AFFX-BioB-3_at
184.4731
P
0.001795911
AFFX-BioC-5_at
640.5264
P
8.14E-05
AFFX-BioC-3_at
894.037
P
0.000169227
AFFX-BioDn-5_at
1555.452
P
7.01E-05
AFFX-BioDn-3_at
3190.425
P
0.000146581
AFFX-CreX-5_at
9364.929
P
5.17E-05
AFFX-CreX-3_at
12240.47
P
4.43E-05
AFFX-DapX-5_at
8.934217
A
0.6455473
AFFX-DapX-M_at
47.10523
A
0.2165241
AFFX-DapX-3_at
8.913481
A
0.8605175
AFFX-LysX-5_at
4.575373
A
0.7122569
AFFX-LysX-M_at
58.31818
A
0.5
AFFX-LysX-3_at
53.42813
A
0.07269989
AFFX-PheX-5_at
2.965438
A
0.9535185
AFFX-PheX-M_at
2.527961
A
0.9848174
AFFX-PheX-3_at
53.6613
A
0.3544527
AFFX-ThrX-5_at
26.86527
A
0.5740377
AFFX-ThrX-M_at
33.68385
A
0.3006063
Total number of rows:
45101
Table truncated, full table size
1427 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM214823.CEL.gz
3.8 Mb
(ftp)
(http)
CEL
Processed data included within Sample table
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