GEO Publications
Handout
NAR 2024 (latest)
NAR 2002 (original)
All publications
FAQ
MIAME
Email GEO
NCBI
>
GEO
>
Accession Display
Not logged in |
Login
GEO help:
Mouse over screen elements for information.
Scope:
Self
Platform
Samples
Series
Family
Format:
HTML
SOFT
MINiML
Amount:
Brief
Quick
GEO accession:
Sample GSM214824
Query DataSets for GSM214824
Status
Public on Jul 31, 2008
Title
NON6
Sample type
RNA
Source name
Mouse spleen at 4 month
Organism
Mus musculus
Characteristics
Male DBA-1/BALB/c-Il1rn -/- F2 a=Non6
Extracted molecule
total RNA
Extraction protocol
Trizol
Label
Biotin
Label protocol
Standard Affymetrix protocol
Hybridization protocol
Standard Affymetrix protocol with Fluidics Station 450
Scan protocol
Standard Affymetrix protocol with GeneChip Scanner 3000
Description
Gene expression data
Data processing
The data were analyzed with Expressiojn Console 1.1 using default MAS5 method. The target intensity was 500.
Submission date
Aug 02, 2007
Last update date
Aug 28, 2018
Contact name
Jian Yan
E-mail(s)
jyan1@utmem.edu
Phone
901-448-7830
Organization name
University of Tennessee Health Science Center
Department
Orthopedics Surgery
Lab
Weikuan Gu
Street address
956 Court Ave
City
Memphis
State/province
TN
ZIP/Postal code
38163
Country
USA
Platform ID
GPL1261
Series (1)
GSE8690
Microarray analysis identifies distinct subpopulations of arthritic mice deficient for interleukin 1 receptor antagonist
Relations
Reanalyzed by
GSE119085
Data table header descriptions
ID_REF
VALUE
MAS5-calculated signal intensity
ABS_CALL
the call in an absolute analysis that indicates if the transcript was present (P) , absent (A) , or marginal (M)
DETECTION P-VALUE
P value that indicates the significance levell of the detection call
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
AFFX-BioB-5_at
220.6432
P
0.009337437
AFFX-BioB-M_at
257.9127
P
0.000972149
AFFX-BioB-3_at
290.294
P
0.001795911
AFFX-BioC-5_at
530.9053
P
0.000258358
AFFX-BioC-3_at
718.7277
P
0.000509415
AFFX-BioDn-5_at
1183.58
P
0.000169227
AFFX-BioDn-3_at
3292.916
P
0.000296708
AFFX-CreX-5_at
8332.771
P
5.17E-05
AFFX-CreX-3_at
11691.44
P
4.43E-05
AFFX-DapX-5_at
6.993312
A
0.6993936
AFFX-DapX-M_at
14.62809
A
0.5886198
AFFX-DapX-3_at
11.40079
A
0.5740377
AFFX-LysX-5_at
15.74286
A
0.5740377
AFFX-LysX-M_at
15.24968
A
0.7609373
AFFX-LysX-3_at
7.589825
A
0.5886198
AFFX-PheX-5_at
4.377702
A
0.9535185
AFFX-PheX-M_at
3.492815
A
0.957038
AFFX-PheX-3_at
15.19903
A
0.7371734
AFFX-ThrX-5_at
6.08807
A
0.9457867
AFFX-ThrX-M_at
5.900789
A
0.6455594
Total number of rows:
45101
Table truncated, full table size
1420 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM214824.CEL.gz
3.9 Mb
(ftp)
(http)
CEL
Processed data included within Sample table
|
NLM
|
NIH
|
GEO Help
|
Disclaimer
|
Accessibility
|
