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GEO accession:
Sample GSM214916
Query DataSets for GSM214916
Status
Public on Jul 31, 2008
Title
NON10
Sample type
RNA
Source name
Mouse spleen at 4 month
Organism
Mus musculus
Characteristics
Male DBA-1/BALB/c-Il1rn -/- F2 a=Non10
Extracted molecule
total RNA
Extraction protocol
Trizol
Label
Biotin
Label protocol
Standard Affymetrix protocol
Hybridization protocol
Standard Affymetrix protocol with Fluidics Station 450
Scan protocol
Standard Affymetrix protocol with GeneChip Scanner 3000
Description
Gene expression data
Data processing
The data were analyzed with Expressiojn Console 1.1 using default MAS5 method. The target intensity was 500.
Submission date
Aug 02, 2007
Last update date
Aug 28, 2018
Contact name
Jian Yan
E-mail(s)
jyan1@utmem.edu
Phone
901-448-7830
Organization name
University of Tennessee Health Science Center
Department
Orthopedics Surgery
Lab
Weikuan Gu
Street address
956 Court Ave
City
Memphis
State/province
TN
ZIP/Postal code
38163
Country
USA
Platform ID
GPL1261
Series (1)
GSE8690
Microarray analysis identifies distinct subpopulations of arthritic mice deficient for interleukin 1 receptor antagonist
Relations
Reanalyzed by
GSE119085
Data table header descriptions
ID_REF
VALUE
MAS5-calculated signal intensity
ABS_CALL
the call in an absolute analysis that indicates if the transcript was present (P) , absent (A) , or marginal (M)
DETECTION P-VALUE
P value that indicates the significance levell of the detection call
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
AFFX-BioB-5_at
160.3035
P
0.01667011
AFFX-BioB-M_at
155.5841
P
0.000340305
AFFX-BioB-3_at
146.2068
P
0.01254675
AFFX-BioC-5_at
637.4178
P
7.01E-05
AFFX-BioC-3_at
956.6194
P
0.000195116
AFFX-BioDn-5_at
1308.33
P
6.02E-05
AFFX-BioDn-3_at
3803.438
P
6.02E-05
AFFX-CreX-5_at
11485.6
P
4.43E-05
AFFX-CreX-3_at
14346.51
P
4.43E-05
AFFX-DapX-5_at
18.40886
A
0.5148901
AFFX-DapX-M_at
52.18571
A
0.2751286
AFFX-DapX-3_at
4.914844
A
0.9780982
AFFX-LysX-5_at
16.08692
A
0.6994095
AFFX-LysX-M_at
10.45119
A
0.8686389
AFFX-LysX-3_at
4.414552
A
0.6729205
AFFX-PheX-5_at
4.337563
A
0.9370707
AFFX-PheX-M_at
10.45008
A
0.9043331
AFFX-PheX-3_at
60.31505
A
0.1658614
AFFX-ThrX-5_at
52.00591
A
0.4259623
AFFX-ThrX-M_at
23.59603
A
0.5
Total number of rows:
45101
Table truncated, full table size
1427 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM214916.CEL.gz
3.4 Mb
(ftp)
(http)
CEL
Processed data included within Sample table
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