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GEO accession:
Sample GSM214974
Query DataSets for GSM214974
Status
Public on Jul 31, 2008
Title
NON16
Sample type
RNA
Source name
Mouse spleen at 4 month
Organism
Mus musculus
Characteristics
Male DBA-1/BALB/c-Il1rn -/- F2 a=Non16
Extracted molecule
total RNA
Extraction protocol
Trizol
Label
Biotin
Label protocol
Standard Affymetrix protocol
Hybridization protocol
Standard Affymetrix protocol with Fluidics Station 450
Scan protocol
Standard Affymetrix protocol with GeneChip Scanner 3000
Description
Gene expression data
Data processing
The data were analyzed with Expressiojn Console 1.1 using default MAS5 method. The target intensity was 500.
Submission date
Aug 02, 2007
Last update date
Aug 28, 2018
Contact name
Jian Yan
E-mail(s)
jyan1@utmem.edu
Phone
901-448-7830
Organization name
University of Tennessee Health Science Center
Department
Orthopedics Surgery
Lab
Weikuan Gu
Street address
956 Court Ave
City
Memphis
State/province
TN
ZIP/Postal code
38163
Country
USA
Platform ID
GPL1261
Series (1)
GSE8690
Microarray analysis identifies distinct subpopulations of arthritic mice deficient for interleukin 1 receptor antagonist
Relations
Reanalyzed by
GSE119085
Data table header descriptions
ID_REF
VALUE
MAS5-calculated signal intensity
ABS_CALL
the call in an absolute analysis that indicates if the transcript was present (P) , absent (A) , or marginal (M)
DETECTION P-VALUE
P value that indicates the significance levell of the detection call
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
AFFX-BioB-5_at
227.5751
P
0.000753643
AFFX-BioB-M_at
356.2479
P
0.000224668
AFFX-BioB-3_at
234.3764
P
0.002555524
AFFX-BioC-5_at
849.1245
P
9.45E-05
AFFX-BioC-3_at
1309.86
P
0.000146581
AFFX-BioDn-5_at
1537.681
P
7.01E-05
AFFX-BioDn-3_at
4058.509
P
8.14E-05
AFFX-CreX-5_at
9806.113
P
5.17E-05
AFFX-CreX-3_at
13014.94
P
4.43E-05
AFFX-DapX-5_at
3.442342
A
0.9273001
AFFX-DapX-M_at
42.83072
A
0.3684377
AFFX-DapX-3_at
14.90368
A
0.6315623
AFFX-LysX-5_at
4.098208
A
0.8686389
AFFX-LysX-M_at
6.205083
A
0.957038
AFFX-LysX-3_at
3.919442
A
0.7834759
AFFX-PheX-5_at
2.421927
A
0.9219982
AFFX-PheX-M_at
8.739875
A
0.8520612
AFFX-PheX-3_at
19.47841
A
0.5740377
AFFX-ThrX-5_at
13.72258
A
0.8047336
AFFX-ThrX-M_at
16.41465
A
0.5445914
Total number of rows:
45101
Table truncated, full table size
1427 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM214974.CEL.gz
3.8 Mb
(ftp)
(http)
CEL
Processed data included within Sample table
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