GEO Publications
Handout
NAR 2024 (latest)
NAR 2002 (original)
All publications
FAQ
MIAME
Email GEO
NCBI
>
GEO
>
Accession Display
Not logged in |
Login
GEO help:
Mouse over screen elements for information.
Scope:
Self
Platform
Samples
Series
Family
Format:
HTML
SOFT
MINiML
Amount:
Brief
Quick
GEO accession:
Sample GSM215007
Query DataSets for GSM215007
Status
Public on Jul 31, 2008
Title
ART17
Sample type
RNA
Source name
Mouse spleen at 4 month
Organism
Mus musculus
Characteristics
Male DBA-1/BALB/c-Il1rn -/- F2 art17
Extracted molecule
total RNA
Extraction protocol
Trizol
Label
Biotin
Label protocol
Standard Affymetrix protocol
Hybridization protocol
Standard Affymetrix protocol with Fluidics Station 450
Scan protocol
Standard Affymetrix protocol with GeneChip Scanner 3000
Description
Gene expression data
Data processing
The data were analyzed with Expressiojn Console 1.1 using default MAS5 method. The target intensity was 500.
Submission date
Aug 02, 2007
Last update date
Aug 28, 2018
Contact name
Jian Yan
E-mail(s)
jyan1@utmem.edu
Phone
901-448-7830
Organization name
University of Tennessee Health Science Center
Department
Orthopedics Surgery
Lab
Weikuan Gu
Street address
956 Court Ave
City
Memphis
State/province
TN
ZIP/Postal code
38163
Country
USA
Platform ID
GPL1261
Series (1)
GSE8690
Microarray analysis identifies distinct subpopulations of arthritic mice deficient for interleukin 1 receptor antagonist
Relations
Reanalyzed by
GSE119085
Data table header descriptions
ID_REF
VALUE
MAS5-calculated signal intensity
ABS_CALL
the call in an absolute analysis that indicates if the transcript was present (P) , absent (A) , or marginal (M)
DETECTION P-VALUE
P value that indicates the significance levell of the detection call
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
AFFX-BioB-5_at
370.6218
P
0.000662269
AFFX-BioB-M_at
648.1818
P
4.43E-05
AFFX-BioB-3_at
457.5783
P
0.000258358
AFFX-BioC-5_at
1488.347
P
5.17E-05
AFFX-BioC-3_at
1929.806
P
6.02E-05
AFFX-BioDn-5_at
2835.82
P
4.43E-05
AFFX-BioDn-3_at
6562.519
P
5.17E-05
AFFX-CreX-5_at
16018.75
P
5.17E-05
AFFX-CreX-3_at
19753.56
P
4.43E-05
AFFX-DapX-5_at
32.32272
A
0.313723
AFFX-DapX-M_at
50.26278
P
0.04646733
AFFX-DapX-3_at
5.92526
A
0.8978546
AFFX-LysX-5_at
17.70717
A
0.3969195
AFFX-LysX-M_at
10.1141
A
0.7723636
AFFX-LysX-3_at
8.109889
A
0.5
AFFX-PheX-5_at
5.077653
A
0.8148693
AFFX-PheX-M_at
5.393129
A
0.9663227
AFFX-PheX-3_at
17.35311
A
0.5445875
AFFX-ThrX-5_at
4.646644
A
0.9906626
AFFX-ThrX-M_at
7.58325
A
0.6593388
Total number of rows:
45101
Table truncated, full table size
1426 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM215007.CEL.gz
3.6 Mb
(ftp)
(http)
CEL
Processed data included within Sample table
|
NLM
|
NIH
|
GEO Help
|
Disclaimer
|
Accessibility
|
