|
| Status |
Public on Jan 11, 2008 |
| Title |
mouse white adipose tissue, LA fed (control), T2, biological rep2 |
| Sample type |
RNA |
| |
|
| Source name |
RP tissue, LA, 12 hours
|
| Organism |
Mus musculus |
| Characteristics |
Strain:C57BL/6J
Gender:male
Tissue:RP fatpad
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Trizol extraction of total RNA was performed according to the manufacturer's instructions.
|
| Label |
biotin
|
| Label protocol |
Biotinylated cRNA were prepared according to the standard Affymetrix protocol (reaction at 37C for 16h) from 15 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
|
| |
|
| Hybridization protocol |
Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C, refer to GeneChip Expression Analysis Technical Manual (www.affymetrix.com). GeneChips were washed and stained with streptavidin-phycoerythrin conjugate on an Affymetrix Fluidics Station 450
|
| Scan protocol |
GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 7G; Pixel size: 1.56 um; Filter: 570 nm
|
| Description |
five pooled mice for each Sample
|
| Data processing |
The data was analysed using Rosetta Resolver 6.0, creating ratio-experiments for each timepoint using control reps as one pool, and treatment reps as the other pool. Resulting logratios and p-values are calculated using Rosetta's proprietary ratio error model.
|
| |
|
| Submission date |
Aug 03, 2007 |
| Last update date |
Aug 28, 2018 |
| Contact name |
Jean-Jack M. Riethoven |
| E-mail(s) |
jeanjack@unl.edu
|
| Organization name |
University of Nebraska-Lincoln
|
| Department |
Beadle Center for Biotechnology
|
| Lab |
Bioinformatics Core Research Facility
|
| Street address |
1901 Vine Street
|
| City |
Lincoln |
| State/province |
NE |
| ZIP/Postal code |
68588-0665 |
| Country |
USA |
| |
|
| Platform ID |
GPL1261 |
| Series (2) |
| GSE8679 |
Gene expression in mouse white adipose tissue |
| GSE11384 |
Trans-10, cis-12 conjugated linoleic acid activates the integrated stress response pathway in adipocytes |
|
| Relations |
| Reanalyzed by |
GSE119085 |
