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Sample GSM2176911 Query DataSets for GSM2176911
Status Public on Apr 01, 2017
Title Benign 11
Sample type RNA
 
Source name Ovarian Tissue
Organism Homo sapiens
Characteristics survival time (months): NA
survival status: ALIVE
tumor stage: NA
Extracted molecule total RNA
Extraction protocol As per manufacturer instruction
Label FAMTP
Label protocol As per manufacturer instruction
 
Hybridization protocol n/a
Scan protocol n/a
Description Benign Ovarian Mass, Subject 11
microRNA
Data processing The raw data were processed using Bioconductor htqpcr package, and normalized using Delta-CT with RNU44 and U6, followed by quantile normalization. MicroRNAs absent in more than 25% of samples were discarded.
Data were processed using the OpenArray Real-Time qPCR Analysis software and exported for analysis using the Applied Biosystems DataAssist Software
 
Submission date May 25, 2016
Last update date Apr 01, 2017
Contact name Ilya Korsunsky
E-mail(s) ikorsuns@broadinstitute.org
Organization name Brigham and Women's Hospital
Department Genetics
Lab Raychaudhuri
Street address 77 Avenue Louis Pasteur
City Boston
State/province MA
ZIP/Postal code 02115
Country USA
 
Platform ID GPL17485
Series (1)
GSE81873 Two microRNA Signatures for Malignancy and Immune Infiltration Predict Overall Survival in Advanced Epithelial Ovarian Cancer

Data table header descriptions
ID_REF
VALUE quantile

Data table
ID_REF VALUE
000377_hsa-let-7a 1.329573077
000379_hsa-let-7c 1.751265385
000382_hsa-let-7f 6.051265385
000387_hsa-miR-10a 6.232373077
000389_hsa-miR-15a 9.509803846
000390_hsa-miR-15b 5.907957692
000391_hsa-miR-16 3.88965
000395_hsa-miR-19a 7.913111538
000396_hsa-miR-19b 1.849596154
000397_hsa-miR-21 0.202034615
000402_hsa-miR-24 -0.870734615
000403_hsa-miR-25 18.91915
000405_hsa-miR-26a 0.016334615
000407_hsa-miR-26b 1.811803846
000408_hsa-miR-27a 18.91915
000409_hsa-miR-27b 3.336573077
000411_hsa-miR-28 5.786573077
000413_hsa-miR-29b 6.997265385
000416_hsa-miR-30a-3p 4.09765
000417_hsa-miR-30a-5p 2.898726923

Total number of rows: 169

Table truncated, full table size 5 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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