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Sample GSM2178227 Query DataSets for GSM2178227
Status Public on Sep 13, 2017
Title Genomic DNA from 184A1
Sample type genomic
 
Source name 184A1
Organism Homo sapiens
Characteristics gender: Female
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from nine breast HMECs samples using Qiagen DNeasy Kit according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
 
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation850K Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using iSCAN using standard recommended Illumina scanner setting
Description immortal
Data processing GenomeStudio software v2010.3
 
Submission date May 26, 2016
Last update date Sep 13, 2017
Contact name Jonglyul Park
E-mail(s) nlcguard@kribb.re.kr
Organization name Korea Research Institute of Bioscience and Biotechnology
Department Medical genomics
Street address 52, Eoeun-dong, Yuseong-gu
City daejeon
ZIP/Postal code 305-806
Country South Korea
 
Platform ID GPL21145
Series (1)
GSE81939 Genome-wide DNA methylation profiling in nine HMECs

Data table header descriptions
ID_REF
VALUE Average Beta
Detection Pval

Data table
ID_REF VALUE Detection Pval
cg00000029 0.5860225 0
cg00000103 0.1039791 0
cg00000109 0.8281416 0
cg00000155 0.9298759 0
cg00000158 0.8949592 0
cg00000165 0.7283936 0
cg00000221 0.8431889 0
cg00000236 0.9124746 0
cg00000289 0.8371118 0
cg00000292 0.903456 0
cg00000321 0.745428 0
cg00000363 0.703156 0
cg00000540 0.5277207 0
cg00000579 0.923184 0
cg00000596 0.06165426 0
cg00000622 0.01289034 0
cg00000658 0.8257383 0
cg00000714 0.149918 0
cg00000721 0.9265011 0
cg00000734 0.05771742 0

Total number of rows: 866895

Table truncated, full table size 19676 Kbytes.




Supplementary file Size Download File type/resource
GSM2178227_184A1_Grn.idat.gz 7.1 Mb (ftp)(http) IDAT
GSM2178227_184A1_Red.idat.gz 7.2 Mb (ftp)(http) IDAT
Processed data included within Sample table

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