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Sample GSM217872 Query DataSets for GSM217872
Status Public on Sep 15, 2007
Title Non transgenic Replicate2
Sample type RNA
 
Source name heart tissue from normal C57BL/6 mouse
Organism Mus musculus
Characteristics non-transgenic mouse heart
Extracted molecule total RNA
Extraction protocol RNEasy (Qiagen) Kit was used for total RNA extraction from heart tissue. For homogenization,
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
 
Hybridization protocol Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Mouse Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
Scan protocol GeneChips were scanned using the GeneChip® Scanner 3000.
Description Gene expression data from normal C57BL/6 mouse
Data processing The data were preprocessed with GCRMA package provided in Bioconductor and quantile normalization as normalization method.
 
Submission date Aug 14, 2007
Last update date Aug 28, 2018
Contact name Venkata Suresh Kumar surampudi
E-mail(s) kumars@ccf.org
Phone 216-445-6636
Organization name Lerner Research Institute
Department Molecular Cardiology
Lab Karnik Lab
Street address 9500 Euclid Avenue
City Cleveland
State/province OH
ZIP/Postal code 44195
Country USA
 
Platform ID GPL1261
Series (1)
GSE8771 Expression data from hAT1R transgenic and non-transgenic C57BL/6 mouse heart tissue
Relations
Reanalyzed by GSE119085

Data table header descriptions
ID_REF
VALUE GCRMA signal intensity

Data table
ID_REF VALUE
1415670_at 9.572478009
1415671_at 9.509334701
1415672_at 10.18706716
1415673_at 6.900767909
1415674_a_at 8.559889656
1415675_at 6.770445526
1415676_a_at 11.40156007
1415677_at 9.177778701
1415678_at 10.65479406
1415679_at 10.41805305
1415680_at 8.448006959
1415681_at 9.72736821
1415682_at 7.93873533
1415683_at 10.13418957
1415684_at 7.839716232
1415685_at 9.255296463
1415686_at 9.097802126
1415687_a_at 12.72542255
1415688_at 10.66596268
1415689_s_at 7.197609615

Total number of rows: 45101

Table truncated, full table size 1026 Kbytes.




Supplementary file Size Download File type/resource
GSM217872.CEL.gz 3.6 Mb (ftp)(http) CEL
GSM217872.EXP.gz 401 b (ftp)(http) EXP
Processed data included within Sample table
Raw data provided as supplementary file

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