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GEO accession:
Sample GSM218301
Query DataSets for GSM218301
Status
Public on Aug 17, 2007
Title
WT macrophage LPS
Sample type
RNA
Source name
Wild type macrophages were treated with LPS
Organism
Mus musculus
Characteristics
129/B6 background
Biomaterial provider
Osaka University
Extracted molecule
total RNA
Extraction protocol
Trizol extraction of total RNA was performed according to manufacture's instructions.
Label
Biotinylated RNA
Label protocol
Biotinylated cRNA were prepared according to Affymetryx protocol
Hybridization protocol
Following fragmentation, 20 ug of cRNA were hybridized for 16 hr at 45C on Genechip Mouse Genome array.
Scan protocol
Gene chip scanner 3000 OB
Description
Successfully analyzed
Data processing
MAS5.0 was used
Submission date
Aug 15, 2007
Last update date
Aug 02, 2019
Contact name
Masahiro Yamamoto
E-mail(s)
myamamoto@ongene.med.osaka-u.ac.jp
Organization name
Osaka University
Street address
2-2, Yamada-oka
City
Suita
State/province
Osaka
ZIP/Postal code
565-0871
Country
Japan
Platform ID
GPL1261
Series (1)
GSE8788
Comparison of gene expression pattern between Wild-type and Trib1-deficient mice (Gene chip data for JEM 20070183)
Relations
Reanalyzed by
GSE119085
Reanalyzed by
GSE135324
Data table header descriptions
ID_REF
VALUE
MAS 5.0 signal
ABS_CALL
DETECTION P-VALUE
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
AFFX-BioB-5_at
1067.5
P
0.000509415
AFFX-BioB-M_at
1735.91
P
5.16732e-05
AFFX-BioB-3_at
874.107
P
0.00010954
AFFX-BioC-5_at
2494.34
P
7.00668e-05
AFFX-BioC-3_at
2228.21
P
4.42873e-05
AFFX-BioDn-5_at
3330.87
P
4.42873e-05
AFFX-BioDn-3_at
13965.2
P
6.02111e-05
AFFX-CreX-5_at
36432.9
P
5.16732e-05
AFFX-CreX-3_at
42455.3
P
4.42873e-05
AFFX-DapX-5_at
7.16538
A
0.645547
AFFX-DapX-M_at
50.2919
A
0.108979
AFFX-DapX-3_at
9.37445
A
0.659339
AFFX-LysX-5_at
8.99574
A
0.574038
AFFX-LysX-M_at
35.2688
A
0.631562
AFFX-LysX-3_at
35.4639
A
0.205712
AFFX-PheX-5_at
4.90706
A
0.904333
AFFX-PheX-M_at
2.10023
A
0.916408
AFFX-PheX-3_at
21.3068
A
0.313723
AFFX-ThrX-5_at
10.0996
A
0.814869
AFFX-ThrX-M_at
43.5201
A
0.205732
Total number of rows:
45101
Table truncated, full table size
1364 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM218301.CEL.gz
3.6 Mb
(ftp)
(http)
CEL
GSM218301.CHP.gz
894.6 Kb
(ftp)
(http)
CHP
Processed data included within Sample table
Processed data provided as supplementary file
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