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Sample GSM218303 Query DataSets for GSM218303
Status Public on Aug 17, 2007
Title Trib1 #1 KO macrophage treated with LPS
Sample type RNA
 
Source name Trib1 #1 KO macrophages were treated with LPS
Organism Mus musculus
Characteristics 129/B6 background, 6-10 weeks
Biomaterial provider Osaka University
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA was performed according to manufacture's instructions.
Label Biotinylated RNA
Label protocol Biotinylated cRNA were prepared according to Affymetryx protocol
 
Hybridization protocol Following fragmentation, 20 ug of cRNA were hybridized for 16 hr at 45C on Genechip Mouse Genome array.
Scan protocol Gene chip scanner 3000 OB
Description Successfully analyzed
Data processing MAS5.0 was used
 
Submission date Aug 15, 2007
Last update date Aug 02, 2019
Contact name Masahiro Yamamoto
E-mail(s) myamamoto@ongene.med.osaka-u.ac.jp
Organization name Osaka University
Street address 2-2, Yamada-oka
City Suita
State/province Osaka
ZIP/Postal code 565-0871
Country Japan
 
Platform ID GPL1261
Series (1)
GSE8788 Comparison of gene expression pattern between Wild-type and Trib1-deficient mice (Gene chip data for JEM 20070183)
Relations
Reanalyzed by GSE119085
Reanalyzed by GSE135324

Data table header descriptions
ID_REF
VALUE MAS 5.0 signal
ABS_CALL
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 139.814 P 0.000972149
AFFX-BioB-M_at 183.143 P 0.000195116
AFFX-BioB-3_at 121.886 P 0.000146581
AFFX-BioC-5_at 350.269 P 7.00668e-05
AFFX-BioC-3_at 425.611 P 4.42873e-05
AFFX-BioDn-5_at 722.858 P 6.02111e-05
AFFX-BioDn-3_at 1739.93 P 0.000146581
AFFX-CreX-5_at 5294.5 P 5.16732e-05
AFFX-CreX-3_at 6004.58 P 4.42873e-05
AFFX-DapX-5_at 1.37006 A 0.48511
AFFX-DapX-M_at 5.12529 A 0.287743
AFFX-DapX-3_at 6.67026 A 0.659339
AFFX-LysX-5_at 0.683738 A 0.783476
AFFX-LysX-M_at 4.66886 A 0.686277
AFFX-LysX-3_at 0.382048 A 0.712274
AFFX-PheX-5_at 0.365151 A 0.945787
AFFX-PheX-M_at 0.882914 A 0.814869
AFFX-PheX-3_at 3.12108 A 0.470241
AFFX-ThrX-5_at 2.63584 A 0.631562
AFFX-ThrX-M_at 4.80836 A 0.382599

Total number of rows: 45101

Table truncated, full table size 1365 Kbytes.




Supplementary file Size Download File type/resource
GSM218303.CEL.gz 3.5 Mb (ftp)(http) CEL
GSM218303.CHP.gz 249.0 Kb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

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