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Sample GSM2188954 Query DataSets for GSM2188954
Status Public on Jun 01, 2018
Title FT1 Control
Sample type RNA
Source name FT1
Organism Mus musculus
Characteristics tissue: Fallopian tube
Treatment protocol Tumors were generated by treatment of mice with doxycycline. Control mice were also treated with doxycycline before fallopian tube extraction.
Growth protocol Mice were bred following the IACUC protocol at MD Anderson Cancer Center mouse facility.
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
Hybridization protocol Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on Affymetrix U133 Plus 2.0 array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
Scan protocol GeneChips were scanned using the Hewlett-Packard GeneArray Scanner G2500A.
Description Gene expression data from fallopian tube of wild type mice treated with doxycycline
Data processing Robust multi-array average (RMA) method was used with default options (with background correction, quantile normalization, and log transformation) to normalize raw data from batches using R/Bioconductor‘s affy package
Submission date Jun 06, 2016
Last update date Jun 01, 2018
Contact name Sharmistha Sarkar
Organization name The University of Texas MD Anderson Cancer Center
Department Genomic Medicine
Street address 1515 Holcombe Boulevard
City Houston
State/province Texas
ZIP/Postal code 77030
Country USA
Platform ID GPL16368
Series (1)
GSE82319 PRKCI promotes immune suppression in ovarian cancer through YAP1

Data table header descriptions
VALUE normalized signal

Data table
100008567_at 6.548275085
100009600_at 4.88295291
100012_at 4.458859168
100017_at 6.144003345
100019_at 7.827253015
100034251_at 8.896666688
100034739_at 3.411286147
100034748_at 3.621628243
100036520_at 3.122895281
100036521_at 7.764638137
100036523_at 3.544032732
100036768_at 3.639955423
100037258_at 8.86871188
100037262_at 4.462864819
100037278_at 5.728282132
100038347_at 7.027750277
100038358_at 3.395798394
100038371_at 2.608173318
100038392_at 3.477626112
100038398_at 5.772520983

Total number of rows: 17566

Table truncated, full table size 365 Kbytes.

Supplementary file Size Download File type/resource
GSM2188954_04_FT1.CEL.gz 3.5 Mb (ftp)(http) CEL
Raw data provided as supplementary file
Processed data included within Sample table

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