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Sample GSM219114 Query DataSets for GSM219114
Status Public on Sep 24, 2007
Title control_crypt_day2_sample1
Sample type RNA
 
Source name intestinal crypt cells isolated by laser capture microdissection
Organism Mus musculus
Characteristics villin-creERT2:beta-catenin+/lox, induced by tamoxifen for 2days
Extracted molecule total RNA
Extraction protocol Pico PureTM RNA Isolation Kit, Arcturus
Label biotin
Label protocol IVT Affymetrix kit
 
Hybridization protocol Affymetrix
Scan protocol Affymetrix
Description Expression analysis of intestinal crypt mRNA of control mice vs. beta-catenin deleted mutant animals (2days of deletion).
Data processing MAS5.0
 
Submission date Aug 20, 2007
Last update date Aug 28, 2018
Contact name Joerg Huelsken
Organization name ISREC
Street address Ch. des Boveresses 155
City Epalinges
ZIP/Postal code 1066
Country Switzerland
 
Platform ID GPL1261
Series (1)
GSE8818 Expression changes in intestinal crypts upon deletion of beta-catenin
Relations
Reanalyzed by GSE119085

Data table header descriptions
ID_REF
VALUE expression level
ABS_CALL Affymetrix absence call
DETECTION P-VALUE p-value of detection

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 72.3258 P 0.00159257
AFFX-BioB-M_at 112.398 P 4.42873e-05
AFFX-BioB-3_at 64.8861 P 0.000389797
AFFX-BioC-5_at 199.679 P 6.02111e-05
AFFX-BioC-3_at 213.867 P 7.00668e-05
AFFX-BioDn-5_at 493.164 P 4.42873e-05
AFFX-BioDn-3_at 896.303 P 6.02111e-05
AFFX-CreX-5_at 3477.11 P 5.16732e-05
AFFX-CreX-3_at 3501.26 P 4.42873e-05
AFFX-DapX-5_at 9.26901 A 0.250796
AFFX-DapX-M_at 1.70911 A 0.645547
AFFX-DapX-3_at 4.77299 A 0.737173
AFFX-LysX-5_at 6.69306 A 0.262827
AFFX-LysX-M_at 4.92699 A 0.843268
AFFX-LysX-3_at 1.31899 A 0.910522
AFFX-PheX-5_at 0.618818 A 0.988616
AFFX-PheX-M_at 0.355224 A 0.99238
AFFX-PheX-3_at 17.3776 A 0.300606
AFFX-ThrX-5_at 1.04505 A 0.749204
AFFX-ThrX-M_at 6.05776 A 0.470241

Total number of rows: 45101

Table truncated, full table size 1373 Kbytes.




Supplementary file Size Download File type/resource
GSM219114.CEL.gz 6.1 Mb (ftp)(http) CEL
GSM219114.CHP.gz 10.7 Mb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

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