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GEO accession:
Sample GSM219114
Query DataSets for GSM219114
Status
Public on Sep 24, 2007
Title
control_crypt_day2_sample1
Sample type
RNA
Source name
intestinal crypt cells isolated by laser capture microdissection
Organism
Mus musculus
Characteristics
villin-creERT2:beta-catenin+/lox, induced by tamoxifen for 2days
Extracted molecule
total RNA
Extraction protocol
Pico PureTM RNA Isolation Kit, Arcturus
Label
biotin
Label protocol
IVT Affymetrix kit
Hybridization protocol
Affymetrix
Scan protocol
Affymetrix
Description
Expression analysis of intestinal crypt mRNA of control mice vs. beta-catenin deleted mutant animals (2days of deletion).
Data processing
MAS5.0
Submission date
Aug 20, 2007
Last update date
Aug 28, 2018
Contact name
Joerg Huelsken
Organization name
ISREC
Street address
Ch. des Boveresses 155
City
Epalinges
ZIP/Postal code
1066
Country
Switzerland
Platform ID
GPL1261
Series (1)
GSE8818
Expression changes in intestinal crypts upon deletion of beta-catenin
Relations
Reanalyzed by
GSE119085
Data table header descriptions
ID_REF
VALUE
expression level
ABS_CALL
Affymetrix absence call
DETECTION P-VALUE
p-value of detection
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
AFFX-BioB-5_at
72.3258
P
0.00159257
AFFX-BioB-M_at
112.398
P
4.42873e-05
AFFX-BioB-3_at
64.8861
P
0.000389797
AFFX-BioC-5_at
199.679
P
6.02111e-05
AFFX-BioC-3_at
213.867
P
7.00668e-05
AFFX-BioDn-5_at
493.164
P
4.42873e-05
AFFX-BioDn-3_at
896.303
P
6.02111e-05
AFFX-CreX-5_at
3477.11
P
5.16732e-05
AFFX-CreX-3_at
3501.26
P
4.42873e-05
AFFX-DapX-5_at
9.26901
A
0.250796
AFFX-DapX-M_at
1.70911
A
0.645547
AFFX-DapX-3_at
4.77299
A
0.737173
AFFX-LysX-5_at
6.69306
A
0.262827
AFFX-LysX-M_at
4.92699
A
0.843268
AFFX-LysX-3_at
1.31899
A
0.910522
AFFX-PheX-5_at
0.618818
A
0.988616
AFFX-PheX-M_at
0.355224
A
0.99238
AFFX-PheX-3_at
17.3776
A
0.300606
AFFX-ThrX-5_at
1.04505
A
0.749204
AFFX-ThrX-M_at
6.05776
A
0.470241
Total number of rows:
45101
Table truncated, full table size
1373 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM219114.CEL.gz
6.1 Mb
(ftp)
(http)
CEL
GSM219114.CHP.gz
10.7 Mb
(ftp)
(http)
CHP
Processed data included within Sample table
Processed data provided as supplementary file
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