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GEO accession:
Sample GSM219117
Query DataSets for GSM219117
Status
Public on Sep 24, 2007
Title
mutant_crypt_day2_sample2
Sample type
RNA
Source name
intestinal crypt cells isolated by laser capture microdissection
Organism
Mus musculus
Characteristics
villin-creERT2:beta-catenin-/lox, induced by tamoxifen for 2days
Extracted molecule
total RNA
Extraction protocol
Pico PureTM RNA Isolation Kit, Arcturus
Label
biotin
Label protocol
IVT Affymetrix kit
Hybridization protocol
Affymetrix
Scan protocol
Affymetrix
Description
Expression analysis of intestinal crypt mRNA of control mice vs. beta-catenin deleted mutant animals (2days of deletion).
Data processing
MAS5.0
Submission date
Aug 20, 2007
Last update date
Aug 28, 2018
Contact name
Joerg Huelsken
Organization name
ISREC
Street address
Ch. des Boveresses 155
City
Epalinges
ZIP/Postal code
1066
Country
Switzerland
Platform ID
GPL1261
Series (1)
GSE8818
Expression changes in intestinal crypts upon deletion of beta-catenin
Relations
Reanalyzed by
GSE119085
Data table header descriptions
ID_REF
VALUE
expression level
ABS_CALL
Affymetrix absence call
DETECTION P-VALUE
p-value of detection
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
AFFX-BioB-5_at
84.0231
P
0.0012475
AFFX-BioB-M_at
128.633
P
7.00668e-05
AFFX-BioB-3_at
70.3767
P
0.000126798
AFFX-BioC-5_at
270.95
P
4.42873e-05
AFFX-BioC-3_at
262.997
P
5.16732e-05
AFFX-BioDn-5_at
643.814
P
4.42873e-05
AFFX-BioDn-3_at
915.625
P
4.42873e-05
AFFX-CreX-5_at
3444.45
P
5.16732e-05
AFFX-CreX-3_at
4002.03
P
5.16732e-05
AFFX-DapX-5_at
1.38176
A
0.824672
AFFX-DapX-M_at
14.8754
A
0.131361
AFFX-DapX-3_at
1.01532
A
0.988616
AFFX-LysX-5_at
1.02957
A
0.868639
AFFX-LysX-M_at
0.832911
A
0.995002
AFFX-LysX-3_at
0.982971
A
0.737173
AFFX-PheX-5_at
5.93884
A
0.814869
AFFX-PheX-M_at
1.72795
A
0.860518
AFFX-PheX-3_at
19.652
A
0.0780018
AFFX-ThrX-5_at
1.67043
A
0.937071
AFFX-ThrX-M_at
1.02093
A
0.804754
Total number of rows:
45101
Table truncated, full table size
1374 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM219117.CEL.gz
6.0 Mb
(ftp)
(http)
CEL
GSM219117.CHP.gz
10.4 Mb
(ftp)
(http)
CHP
Processed data included within Sample table
Processed data provided as supplementary file
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