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Sample GSM219328 Query DataSets for GSM219328
Status Public on Nov 19, 2007
Title nontumorigenic population of MMTV-Wnt-1 breast tumor, Mouse TG1
Sample type RNA
 
Source name breast tumor
Organism Mus musculus
Characteristics nontumorigenic population (Not CD24+Thy+CD45-) of MMTV-Wnt-1 tumor isolated using fluorescence activated cell sorting
Extracted molecule total RNA
Extraction protocol Using RNAqueous-Micro (Ambion #1931).
Label biotin
Label protocol Total RNA was first amplified. Biotinylated cRNA were prepared according to the standard Affymetrix protocol
 
Hybridization protocol Following fragmentation, 15 ug of cRNA were hybridized according to the manufacturer's instructions.
Scan protocol standard Affymetrix procedures
Description nontumorigenic population (Not CD24+Thy+CD45-) of MMTV-Wnt-1 tumor isolated using fluorescence activated cell sorting
Data processing RMA
 
Submission date Aug 20, 2007
Last update date Aug 28, 2018
Contact name Xinhao Wang
E-mail(s) xinhao.wang@oncomed.com
Phone 650-995-8211
Organization name OncoMed Pharmaceuticals Inc
Street address 800 Chesapeake
City Redwood City
State/province CA
ZIP/Postal code 94063
Country USA
 
Platform ID GPL1261
Series (1)
GSE8828 Isolation and molecular characterization of cancer stem cells in MMTVWnt-1 murine breast tumors
Relations
Reanalyzed by GSE119085

Data table header descriptions
ID_REF
VALUE RMA signal intensity

Data table
ID_REF VALUE
1437726_x_at 3.700936396
1434366_x_at 3.358649763
1420465_s_at 2.887365632
1436996_x_at 3.552390799
1449434_at 3.035039118
1439426_x_at 3.497902293
1436905_x_at 6.137541443
1448591_at 4.53882518
1416111_at 4.738073678
1419872_at 4.856889818
1448929_at 3.089388132
1450430_at 3.508462331
1423547_at 4.133477
1450648_s_at 5.058195088
1422124_a_at 2.334982618
1419684_at 4.154006912
1450792_at 3.684566227
1435144_at 2.556651003
1444040_at 3.256673084
1419873_s_at 3.806330824

Total number of rows: 45101

Table truncated, full table size 1026 Kbytes.




Supplementary file Size Download File type/resource
GSM219328.CEL.gz 3.2 Mb (ftp)(http) CEL
Raw data provided as supplementary file
Processed data included within Sample table

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