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Sample GSM219329 Query DataSets for GSM219329
Status Public on Nov 19, 2007
Title nontumorigenic population of MMTV-Wnt-1 breast tumor, Mouse TG2
Sample type RNA
 
Source name breast tumor
Organism Mus musculus
Characteristics nontumorigenic population (Not CD24+Thy+CD45-) of MMTV-Wnt-1 tumor isolated using fluorescence activated cell sorting
Extracted molecule total RNA
Extraction protocol Using RNAqueous-Micro (Ambion #1931).
Label biotin
Label protocol Total RNA was first amplified. Biotinylated cRNA were prepared according to the standard Affymetrix protocol
 
Hybridization protocol Following fragmentation, 15 ug of cRNA were hybridized according to the manufacturer's instructions.
Scan protocol standard Affymetrix procedures
Description nontumorigenic population (Not CD24+Thy+CD45-) of MMTV-Wnt-1 tumor isolated using fluorescence activated cell sorting
Data processing RMA
 
Submission date Aug 20, 2007
Last update date Aug 28, 2018
Contact name Xinhao Wang
E-mail(s) xinhao.wang@oncomed.com
Phone 650-995-8211
Organization name OncoMed Pharmaceuticals Inc
Street address 800 Chesapeake
City Redwood City
State/province CA
ZIP/Postal code 94063
Country USA
 
Platform ID GPL1261
Series (1)
GSE8828 Isolation and molecular characterization of cancer stem cells in MMTVWnt-1 murine breast tumors
Relations
Reanalyzed by GSE119085

Data table header descriptions
ID_REF
VALUE RMA signal intensity

Data table
ID_REF VALUE
1437726_x_at 4.019690938
1434366_x_at 4.488984181
1420465_s_at 2.67321937
1436996_x_at 2.509912637
1449434_at 3.048601527
1439426_x_at 1.6636994
1436905_x_at 5.233855084
1448591_at 3.493380887
1416111_at 4.554480946
1419872_at 4.983915874
1448929_at 3.237876184
1450430_at 4.782798508
1423547_at 3.812465591
1450648_s_at 4.657707308
1422124_a_at 3.589571504
1419684_at 4.131578107
1450792_at 3.027440237
1435144_at 2.654416222
1444040_at 2.757312978
1419873_s_at 4.491360364

Total number of rows: 45101

Table truncated, full table size 1026 Kbytes.




Supplementary file Size Download File type/resource
GSM219329.CEL.gz 3.3 Mb (ftp)(http) CEL
Raw data provided as supplementary file
Processed data included within Sample table

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