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Sample GSM219330 Query DataSets for GSM219330
Status Public on Nov 19, 2007
Title nontumorigenic population of MMTV-Wnt-1 breast tumor, Mouse TG3
Sample type RNA
 
Source name breast tumor
Organism Mus musculus
Characteristics nontumorigenic population (Not CD24+Thy+CD45-) of MMTV-Wnt-1 tumor isolated using fluorescence activated cell sorting
Extracted molecule total RNA
Extraction protocol Using RNAqueous-Micro (Ambion #1931).
Label biotin
Label protocol Total RNA was first amplified. Biotinylated cRNA were prepared according to the standard Affymetrix protocol
 
Hybridization protocol Following fragmentation, 15 ug of cRNA were hybridized according to the manufacturer's instructions.
Scan protocol standard Affymetrix procedures
Description nontumorigenic population (Not CD24+Thy+CD45-) of MMTV-Wnt-1 tumor isolated using fluorescence activated cell sorting
Data processing RMA
 
Submission date Aug 20, 2007
Last update date Aug 28, 2018
Contact name Xinhao Wang
E-mail(s) xinhao.wang@oncomed.com
Phone 650-995-8211
Organization name OncoMed Pharmaceuticals Inc
Street address 800 Chesapeake
City Redwood City
State/province CA
ZIP/Postal code 94063
Country USA
 
Platform ID GPL1261
Series (1)
GSE8828 Isolation and molecular characterization of cancer stem cells in MMTVWnt-1 murine breast tumors
Relations
Reanalyzed by GSE119085

Data table header descriptions
ID_REF
VALUE RMA signal intensity

Data table
ID_REF VALUE
1437726_x_at 4.168877249
1434366_x_at 4.071597773
1420465_s_at 2.935950763
1436996_x_at 5.897464882
1449434_at 4.067229478
1439426_x_at 4.99516843
1436905_x_at 2.574256025
1448591_at 5.623018116
1416111_at 4.553943643
1419872_at 5.888404714
1448929_at 3.080912603
1450430_at 4.078453027
1423547_at 5.490278005
1450648_s_at 4.823008568
1422124_a_at 2.509912637
1419684_at 4.82918904
1450792_at 3.52366092
1435144_at 3.44093945
1444040_at 2.751338151
1419873_s_at 5.003031363

Total number of rows: 45101

Table truncated, full table size 1025 Kbytes.




Supplementary file Size Download File type/resource
GSM219330.CEL.gz 3.3 Mb (ftp)(http) CEL
Raw data provided as supplementary file
Processed data included within Sample table

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