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Sample GSM219534 Query DataSets for GSM219534
Status Public on Dec 01, 2007
Title CLL9-CD4
Sample type RNA
 
Source name splenic CD4 T cells
Organism Mus musculus
Characteristics Em-TCL1, 14.5mo old, Female, CLL
Treatment protocol CD4 or CD8 T cells were isolated using negative selection magnetic labeled antibody mix.
Growth protocol T cells were isolated from fresh tissues or peripheral blood.
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
 
Hybridization protocol Following fragmentation, cRNA were hybridized for overnight at 45C on Affymetrix moe430_2.0 microarray chip.
Scan protocol Each cRNA bound at its complementary oligonucleotide was excited using confocal laser scanner, and the positions and intensities of the fluorescent emissions were captured. These measures provided the basis of subsequent analysis.
Description splenic CD4 T cells_Em-TCL1, 14.5mo old, Female, CLL
Data processing The data were analysed using dCHIP (C Li and W Wong, Proc. Natl. Acad. Sci. Vol. 98, 31-36, 2001a. ).
 
Submission date Aug 21, 2007
Last update date Aug 28, 2018
Contact name Gullu Gorgun
E-mail(s) gullu_gorgun@dfci.harvard.edu
Phone 617 632 3358
Fax 617 632 3222
Organization name Dana-Farber Cancer Institute
Department Medical Oncology
Street address 44 Binney Street
City Boston
State/province MA
ZIP/Postal code 02115
Country USA
 
Platform ID GPL1261
Series (1)
GSE8836 CLL in Em-TCL1 mice provides a biologically relevant model to unravel and reverse immune deficiency in human cancer.
Relations
Reanalyzed by GSE119085

Data table header descriptions
ID_REF
VALUE dCHIP
ABS_CALL
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 431.9 P 0.000052
AFFX-BioB-M_at 744.2 P 0.000044
AFFX-BioB-3_at 596.4 P 0.000044
AFFX-BioC-5_at 1627.1 P 0.000044
AFFX-BioC-3_at 1350.6 P 0.000044
AFFX-BioDn-5_at 2717.4 P 0.000044
AFFX-BioDn-3_at 5477 P 0.000044
AFFX-CreX-5_at 10263.6 P 0.000052
AFFX-CreX-3_at 10827.5 P 0.000044
AFFX-DapX-5_at 4.1 A 0.287743
AFFX-DapX-M_at 1.1 A 0.83416
AFFX-DapX-3_at 1.2 A 0.860559
AFFX-LysX-5_at 0.6 A 0.783476
AFFX-LysX-M_at 0.5 A 0.966335
AFFX-LysX-3_at 1.3 A 0.737191
AFFX-PheX-5_at 0.3 A 0.997133
AFFX-PheX-M_at 0.9 A 0.824672
AFFX-PheX-3_at 2 A 0.737191
AFFX-ThrX-5_at 0.9 A 0.978098
AFFX-ThrX-M_at 4.5 A 0.470241

Total number of rows: 45101

Table truncated, full table size 1176 Kbytes.




Supplementary file Size Download File type/resource
GSM219534.CEL.gz 5.6 Mb (ftp)(http) CEL
GSM219534.TXT.gz 451.6 Kb (ftp)(http) TXT
Raw data provided as supplementary file
Processed data included within Sample table
Processed data provided as supplementary file

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