GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Sample GSM219540 Query DataSets for GSM219540
Status Public on Dec 01, 2007
Title Healthy3-CD4
Sample type RNA
Source name splenic CD4 T cells
Organism Mus musculus
Characteristics Em-TCL1, 4mo old, Male, Healthy
Treatment protocol CD4 or CD8 T cells were isolated using negative selection magnetic labeled antibody mix.
Growth protocol T cells were isolated from fresh tissues or peripheral blood.
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
Hybridization protocol Following fragmentation, cRNA were hybridized for overnight at 45C on Affymetrix moe430_2.0 microarray chip.
Scan protocol Each cRNA bound at its complementary oligonucleotide was excited using confocal laser scanner, and the positions and intensities of the fluorescent emissions were captured. These measures provided the basis of subsequent analysis.
Description splenic CD4 T cells_Em-TCL1, 4mo old, Male, Healthy
Data processing The data were analysed using dCHIP (C Li and W Wong, Proc. Natl. Acad. Sci. Vol. 98, 31-36, 2001a. ).
Submission date Aug 21, 2007
Last update date Aug 28, 2018
Contact name Gullu Gorgun
Phone 617 632 3358
Fax 617 632 3222
Organization name Dana-Farber Cancer Institute
Department Medical Oncology
Street address 44 Binney Street
City Boston
State/province MA
ZIP/Postal code 02115
Country USA
Platform ID GPL1261
Series (1)
GSE8836 CLL in Em-TCL1 mice provides a biologically relevant model to unravel and reverse immune deficiency in human cancer.
Reanalyzed by GSE119085

Data table header descriptions

Data table
AFFX-BioB-5_at 353 P 0.000446
AFFX-BioB-M_at 601.4 P 0.000044
AFFX-BioB-3_at 345.9 P 0.000044
AFFX-BioC-5_at 846.5 P 0.00006
AFFX-BioC-3_at 731.1 P 0.000052
AFFX-BioDn-5_at 956.3 P 0.000044
AFFX-BioDn-3_at 4034.9 P 0.000044
AFFX-CreX-5_at 10721.3 P 0.000052
AFFX-CreX-3_at 11658 P 0.000044
AFFX-DapX-5_at 5.7 A 0.51489
AFFX-DapX-M_at 9.3 A 0.52976
AFFX-DapX-3_at 8.8 A 0.772364
AFFX-LysX-5_at 1.9 A 0.645547
AFFX-LysX-M_at 15.3 A 0.455413
AFFX-LysX-3_at 1.4 A 0.891021
AFFX-PheX-5_at 1.6 A 0.921998
AFFX-PheX-M_at 0.5 A 0.969024
AFFX-PheX-3_at 4.9 A 0.814869
AFFX-ThrX-5_at 2 A 0.876428
AFFX-ThrX-M_at 9.1 A 0.686277

Total number of rows: 45101

Table truncated, full table size 1187 Kbytes.

Supplementary file Size Download File type/resource
GSM219540.CEL.gz 6.1 Mb (ftp)(http) CEL
GSM219540.TXT.gz 458.0 Kb (ftp)(http) TXT
Raw data provided as supplementary file
Processed data included within Sample table
Processed data provided as supplementary file

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap