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Sample GSM219554 Query DataSets for GSM219554
Status Public on Dec 01, 2007
Title CLL1-CD8
Sample type RNA
Source name splenic CD8 T cells
Organism Mus musculus
Characteristics Em-Tcl1, 13.5mo old, Female, CLL
Treatment protocol CD4 or CD8 T cells were isolated using negative selection magnetic labeled antibody mix.
Growth protocol T cells were isolated from fresh tissues or peripheral blood.
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
Hybridization protocol Following fragmentation, cRNA were hybridized for overnight at 45C on Affymetrix moe430_2.0 microarray chip.
Scan protocol Each cRNA bound at its complementary oligonucleotide was excited using confocal laser scanner, and the positions and intensities of the fluorescent emissions were captured. These measures provided the basis of subsequent analysis.
Description splenic CD8 T cells_Em-Tcl1, 13.5mo old, Female, CLL
Data processing The data were analysed using dCHIP (C Li and W Wong, Proc. Natl. Acad. Sci. Vol. 98, 31-36, 2001a. ).
Submission date Aug 21, 2007
Last update date Aug 28, 2018
Contact name Gullu Gorgun
Phone 617 632 3358
Fax 617 632 3222
Organization name Dana-Farber Cancer Institute
Department Medical Oncology
Street address 44 Binney Street
City Boston
State/province MA
ZIP/Postal code 02115
Country USA
Platform ID GPL1261
Series (1)
GSE8836 CLL in Em-TCL1 mice provides a biologically relevant model to unravel and reverse immune deficiency in human cancer.
Reanalyzed by GSE119085

Data table header descriptions

Data table
AFFX-BioB-5_at 402.3 P 0.000044
AFFX-BioB-M_at 687.2 P 0.000044
AFFX-BioB-3_at 525.6 P 0.000044
AFFX-BioC-5_at 1268.6 P 0.000044
AFFX-BioC-3_at 942.4 P 0.000044
AFFX-BioDn-5_at 2586.7 P 0.000044
AFFX-BioDn-3_at 4584.8 P 0.000044
AFFX-CreX-5_at 7676.7 P 0.000052
AFFX-CreX-3_at 8391.4 P 0.000044
AFFX-DapX-5_at 1.4 A 0.440626
AFFX-DapX-M_at 1.9 A 0.659339
AFFX-DapX-3_at 1.2 A 0.724871
AFFX-LysX-5_at 3.5 A 0.227636
AFFX-LysX-M_at 0.5 A 0.921998
AFFX-LysX-3_at 2.7 A 0.529762
AFFX-PheX-5_at 0.3 A 0.993813
AFFX-PheX-M_at 1.9 A 0.672921
AFFX-PheX-3_at 6.6 A 0.275146
AFFX-ThrX-5_at 0.7 A 0.804754
AFFX-ThrX-M_at 0.4 A 0.876469

Total number of rows: 45101

Table truncated, full table size 1160 Kbytes.

Supplementary file Size Download File type/resource
GSM219554.CEL.gz 5.2 Mb (ftp)(http) CEL
GSM219554.TXT.gz 445.4 Kb (ftp)(http) TXT
Raw data provided as supplementary file
Processed data included within Sample table
Processed data provided as supplementary file

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