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Sample GSM220216 Query DataSets for GSM220216
Status Public on Nov 12, 2007
Title vervet parvocellular neuron 3
Sample type RNA
 
Source name lateral geniculate nucleus parvocellular neuronal cell body
Organism Chlorocebus aethiops vervet
Characteristics Adult male vervet monkey (Cercopithecus aethipos), internal identifier number 05-1-4.
Treatment protocol normal animals
Extracted molecule total RNA
Extraction protocol Laser-capture microdissected neuronal cell bodies from the parvocellular layer of the Lateral Geniculate Nucleus. Cells identified by cresyl violet staining.
Sample consists of roughly 3000 pulses from LCM, total RNA amplified through two rounds using the Affymetrix system.
Label biotin
Label protocol Standard Affymetrix protocol, processed at the McGill University and Genome Quebec Innovation Center.
 
Hybridization protocol Standard Affymetrix protocol, processed at the McGill University and Genome Quebec Innovation Center.
Scan protocol Standard Affymetrix protocol, processed at the McGill University and Genome Quebec Innovation Center.
Description vervet monkey samples cross-species hybridized to the Rhesus Macaque Genome Array (Affymetrix)
Data processing CHP file obtained from MAS 5.0
 
Submission date Aug 23, 2007
Last update date Aug 14, 2011
Contact name Pascal Lachance
Organization name McGill University
Department Psychology
Lab Chaudhuri Vision Laboratory
Street address 1205 Ave. Dr. Penfield
City Montreal
State/province QC
ZIP/Postal code H3A1B1
Country Canada
 
Platform ID GPL3535
Series (1)
GSE8859 Laser capture microdissected vervet monkey lateral geniculate nucleus hybridized to the Rhesus Macaque Genome Array.

Data table header descriptions
ID_REF
VALUE expression value
ABS_CALL absolute call
DETECTION P-VALUE detection p value

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 149.901 P 0.000445901
AFFX-BioB-M_at 273.086 P 4.42246e-05
AFFX-BioB-3_at 156.012 P 5.16732e-05
AFFX-BioC-5_at 483.314 P 5.16732e-05
AFFX-BioC-3_at 595.117 P 5.16732e-05
AFFX-BioDn-5_at 1178.61 P 4.42873e-05
AFFX-BioDn-3_at 1751.03 P 6.02111e-05
AFFX-CreX-5_at 5400.61 P 5.16732e-05
AFFX-CreX-3_at 6673.05 P 4.42873e-05
AFFX-DapX-5_at 96.7291 P 6.02111e-05
AFFX-DapX-M_at 1222.62 P 5.16732e-05
AFFX-DapX-3_at 2997.21 P 4.42873e-05
AFFX-LysX-5_at 16.281 P 0.0044838
AFFX-LysX-M_at 114.218 P 0.000296708
AFFX-LysX-3_at 357.002 P 4.42873e-05
AFFX-PheX-5_at 51.9536 P 8.14279e-05
AFFX-PheX-M_at 238.805 P 4.42873e-05
AFFX-PheX-3_at 403.423 P 4.42873e-05
AFFX-ThrX-5_at 36.2052 P 0.0012475
AFFX-ThrX-M_at 218.848 P 5.16732e-05

Total number of rows: 52865

Table truncated, full table size 2126 Kbytes.




Supplementary file Size Download File type/resource
GSM220216.CEL.gz 7.9 Mb (ftp)(http) CEL
GSM220216.CHP.gz 13.9 Mb (ftp)(http) CHP
GSM220216.EXP.gz 354 b (ftp)(http) EXP
Processed data included within Sample table
Processed data provided as supplementary file

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